Protein MDH2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOGAP00000008680	pdb,2dfd,C,#1	24	333	0	89.49
ENSPCAP00000003672	pdb,1mld,D,#1	25	337	0	87.22
ENSONIP00000026056	pdb,2dfd,A,#1	24	336	0	85.942
ENSCHOP00000012027	pdb,1mld,B,#1	3	317	0	85.759
ENSPCAP00000003672	pdb,2dfd,D,#1	24	337	0	86.306
ENSAPLP00000004131	pdb,2dfd,A,#1	24	337	0	89.809
ENSXMAP00000019573	pdb,1mld,B,#1	24	336	0	84.345
ENSDARP00000063661	pdb,1mld,D,#1	24	336	0	86.581
ENSXETP00000019672	pdb,1mld,A,#1	25	336	0	85.577
ENSSBOP00000030859	pdb,2dfd,A,#1	24	297	0	96.715
ENSTGUP00000004737	pdb,2dfd,A,#1	24	339	0	86.076

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.159	0.498	0.344	0.42	0.488	0.092

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.548611111111111	0.03125	0.00694444444444444	0	0.00347222222222222	0	0	0.409722222222222

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.602640731 0.358150149 1.058115537 0.192347336 0.484873075 3.347651754 0.182307789 0.137268992 1.081913669 6.431268461 0.000000002 0.173647723 0.482720294 2.068279539 2.751644690 0.482581075 0.576802567 0.782176180 1.868862236 5.996541209 8.035221451 0.051234688 0.128042271 0.325587448 0.224044252 0.921702855 8.645057661 2.812691302 0.000140073 0.069652339 0.126266284 0.265176925 0.832772397 3.571534434 0.948145744 4.971080455 0.040770592 0.006606268 0.130705812 0.687217332 0.005887526 2.666323518 0.356372885 1.974558775 7.082352231 0.000000002 0.038066380 0.026706717 0.001162352 0.135103199 0.518880508 1.480331117 1.344031118 2.257743162 4.321047167 0.000119707 0.000353667 0.000800288 0.177312957 0.235521077 0.128461961 0.225364288 0.544182286 1.628586954 2.094704835 4.945192905 0.000006438 0.000000001 0.000036509 0.169806936 0.000005345 2.289133944 0.173688380 0.418174271 0.459118575 0.475667811 1.118825496 9.625797631 0.019460648 0.008312726 0.198552087 0.196258004 0.870416749 0.000808287 0.019588868 0.010406596 0.482882098 0.981124013 2.107189034 0.396042199 8.179317320 0.000000002 0.000000000 0.000000001 0.000444700 0.000000261 0.054511534 0.682622646 0.560069458 0.517267403 1.526701841 0.051821546 0.443603331 1.389842612 7.821145494 0.000000002 0.000000009 0.000000001 0.173405474 0.956173589 1.620979856 0.000000003 0.000000002 0.000557820 1.195817618 0.000000002 0.000000158 0.000000003 3.600023660 4.901412223 0.000000002 0.000000000 0.233937111 0.000000001 0.000000001 0.001622564 1.038079691 0.002433556 0.245310115 0.000000116 0.722878614 2.574101296 1.172412164 7.219626168 1.228688824 5.163465691 0.000000002 0.000000000 0.000000001 0.000000001 0.000000001 2.062355547 0.000000004 0.000000446 0.000000002 0.000000002 0.335993028 5.007895051 1.479012215 0.000000008 2.302331385 0.000000015 15.919573209 0.000000002 0.000000000 0.830354981 0.000082440 0.000000385 0.629127295 0.000000013 0.000000005 0.000000085 0.000002882 0.000000316 2.543066300 3.780218742 0.000007602 0.000000006 0.000000015 0.000000016 22.346749043 0.000000002 0.212291037 0.000000106 0.339781777 0.069819013 0.000011763 0.000007997 0.000000723 0.000000387 2.032090944 0.000014115 0.243637302 2.002253554 6.310135032 0.066037253 0.000006401 0.000000016 0.000000023 70.120401144 0.061217900 0.213196000 0.093748700 0.074446900 0.070834000 0.049929800 0.062237900 0.055170300 0.069564600 0.056632800 0.055996400 0.047688100 0.035987600 0.011834200 0.016428000 0.006877590 0.006221310 0.004399320 0.004146140 0.003442950