Protein ME2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSHGLP00100027211	pdb,2yst,A,#1	276	387	9.56e-71	100
MGP_SPRETEiJ_P0070864	pdb,2yst,A,#1	302	413	7.28e-70	99.107
MGP_SPRETEiJ_P0048392	pdb,1wyj,A,#1	26	137	2.05e-69	99.107
MGP_PahariEiJ_P0039073	pdb,1wyj,A,#1	26	137	1.21e-68	96.429
ENSXETP00000048276	pdb,2yst,A,#1	273	384	1.58e-68	96.429
ENSACAP00000002051	pdb,2yst,A,#1	279	390	2.7e-66	92.857
ENSRROP00000032192	pdb,2ee0,A,#1	243	352	1.73e-65	98.182
ENSTNIP00000009726	pdb,2yst,A,#1	273	384	2.33e-65	91.964
ENSMEUP00000007606	pdb,2ee0,A,#1	246	352	2.48e-65	100
ENSVPAP00000009284	pdb,2ee0,A,#1	242	351	9.05e-65	96.364
MGP_PahariEiJ_P0039035	pdb,1wuz,A,#1	24	126	1.45e-64	99.029

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.169	0.232	0.599	0.096	0.133	0.772

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0738562860167	0.0211689991767611	0.00705633305892038	0.00482182759026226	0.00282253322356815	0.00341056097847818	0.00399858873338822	0.882864871221922

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.957110292 0.324583003 2.773212753 0.115610073 0.010184305 6.726926968 0.157829640 0.086334110 0.027808848 4.345094436 0.014724529 0.052419096 0.084573778 0.059272548 0.037322790 0.179593831 0.119701179 0.062522214 0.321875960 3.837619475 4.821845635 0.025857644 0.008276212 0.033662887 0.063649340 0.051075144 5.113032853 0.087254844 0.003462341 0.016791886 0.069310384 0.086163518 0.102969495 0.383573019 0.088164577 5.055917086 0.011775272 0.012785850 0.033611395 0.032026267 0.063191723 0.096537361 0.166458186 0.052751009 5.843791031 0.015071717 0.006469859 0.034404571 0.030832174 0.075542589 0.215628339 0.074973176 0.057561214 0.207361934 7.055495910 0.012630355 0.021283053 0.051618097 0.022207652 0.010502103 0.148122850 0.159191328 0.093909014 0.243292886 0.239700237 8.108906598 0.039493478 0.026277375 0.008225106 0.099300219 0.149883825 0.096949457 0.041911815 0.093002143 0.189531216 0.641141523 0.674175983 16.476234718 0.026889266 0.014225566 0.027073239 0.017979154 0.067717079 0.118746568 0.090106747 0.112054412 0.108198652 0.135327728 0.299297333 0.046394847 25.749577139 0.331028677 0.011894293 0.060408648 0.382814456 0.049470525 0.396343882 0.281289033 0.084372614 0.220163397 0.246851034 0.908126657 0.728344398 0.375259652 56.729635082 4.031224163 0.291482747 1.236224228 0.375956036 0.884256570 0.717958228 0.387267408 1.687378544 0.349839867 0.258504666 1.383336759 1.424365013 0.441808362 6.535326012 79.672178706 10.183167472 0.006730523 0.222438583 0.124104108 0.066860995 0.360771733 0.102300010 0.120450446 0.098402131 0.267091303 0.052274927 0.259783897 1.603322799 0.554982764 71.467459627 496.709102023 0.045329598 0.018534156 0.246384230 0.067981090 0.069008907 0.046362066 0.008109269 0.183089342 0.022100957 0.539682126 1.102528130 0.106247487 1.230997211 5.585368530 10.995019824 70.487299108 306.934567189 0.217632882 0.169849150 0.074144321 0.195008092 0.706115893 0.163813415 0.787875425 0.076791868 1.834940763 0.699524503 2.620438405 0.416059611 1.148183181 5.427670138 6.277245914 26.707955886 37.343950228 354.885644576 3.742614890 0.038580333 0.691487714 1.096504451 1.532520111 0.431834642 1.305347432 0.721397180 0.299383573 4.565146111 2.461854482 0.631137655 3.697101546 1.808589428 5.852093608 5.195087319 8.266857093 69.196239065 125.324882323 0.000298743 0.093768500 0.065836600 0.077481400 0.113622000 0.097064700 0.109043000 0.100345000 0.098324700 0.084480100 0.066646100 0.048004900 0.026959200 0.010936700 0.002068200 0.000942296 0.001022270 0.001008260 0.000777974 0.001368950