Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
FBpp0308283pdb,4p60,A,#1862387.4e-1026.708
ENSAMXP00000006875pdb,4p60,A,#11393153.53e-0827.322
ENSACAP00000002786pdb,4p60,A,#11693947.92e-0827.615
ENSONIP00000019957pdb,4p60,A,#11453151.75e-0728.409
ENSCAPP00000012454pdb,4p60,A,#1912623.15e-0729.944
ENSCINP00000009142pdb,4p60,A,#11594089.97e-0725.758

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0160.0380.9460.0110.4050.584

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2224510813594230.1925849639546860.04428424304840370.0432543769309990.04428424304840370.03192584963954690.01029866117404740.41091658084449

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)