Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSETEP00000002808pdb,4nxw,A,#159357095.318
ENSDNOP00000005902pdb,4nxw,A,#1133432089.836
ENSMEUP00000010211pdb,4nxv,D,#1134433093
ENSMGAP00000013041pdb,4nxt,C,#1133436086.513
ENSOCUP00000011057pdb,4nxu,C,#1131407088.704
ENSDNOP00000005902pdb,4nxt,C,#1132432091.503
ENSOCUP00000011057pdb,4oah,A,#1134407088.926
ENSMODP00000011733pdb,4oah,A,#1136465092.424
ENSOPRP00000009648pdb,4nxt,B,#1132431096.667
ENSTGUP00000010554pdb,4nxt,C,#1133463090.03
ENSMOCP00000011285pdb,4nxu,C,#1131462097.892

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0620.3780.560.0890.5190.392

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3092926490984740.3273231622746190.01664355062413310.00138696255201110.002773925104022190.00138696255201110.002773925104022190.338418862690707

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)