Protein MMAB

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCGRP00001027352	pdb,3ci4,A,#1	51	235	8.2e-40	40.541
ENSCGRP00001027352	pdb,3ci1,A,#1	51	235	9.3e-40	40
ENSCGRP00001027352	pdb,3ci3,A,#1	51	235	9.3e-40	40
ENSMAUP00000010524	pdb,3ci4,A,#1	51	235	1.24e-39	40.323
ENSMAUP00000010524	pdb,3ci3,A,#1	51	235	1.36e-39	40.323
ENSMAUP00000010524	pdb,3ci1,A,#1	51	235	1.36e-39	40.323
ENSRNOP00000066021	pdb,3ci4,A,#1	50	237	1.86e-39	40.212
ENSRNOP00000066021	pdb,3ci3,A,#1	50	237	2.02e-39	39.683
ENSRNOP00000066021	pdb,3ci1,A,#1	50	237	2.02e-39	39.683
ENSORLP00000009299	pdb,2nt8,A,#1	51	233	2.12e-39	39.891
ENSORLP00000009299	pdb,3gaj,A,#1	51	233	2.13e-39	39.891

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.047	0.14	0.813	0.213	0.498	0.289

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.492711370262391	0.19533527696793	0.0145772594752187	0.00583090379008746	0	0	0	0.291545189504373

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.936255210 4.846328952 2.588111408 2.830041680 0.008707522 4.269184234 45.865726194 0.039741440 0.011927231 5.764463544 24.174735492 0.039937077 0.122829805 0.003127040 0.146779340 174.072459122 0.492842609 0.222875622 0.263474583 4.881125430 6.544963051 33.394485412 0.025641606 0.004339912 0.297517218 0.047155170 6.794068449 0.026564149 52.202693171 0.008434641 0.113423959 0.009471029 0.108165440 0.173044049 0.379045520 9.225558909 100.592497595 0.051509759 0.031686736 0.051611705 0.006058737 0.359326101 0.498700413 0.076812299 6.975939551 11.122539275 0.014624083 0.000197941 0.000000003 0.090703682 0.527662458 0.011108355 0.015016661 0.120947038 8.211193366 11.050721385 0.000109889 0.008114905 0.000386958 0.249517347 0.626269912 0.117006305 0.000020019 0.046952777 0.199623637 8.822512133 34.659313883 0.000000082 0.000900700 0.002092293 0.096050904 0.002337768 0.174637796 0.133461060 0.697709637 0.483594280 0.008649316 9.258427037 0.106892594 0.000000001 0.000000001 0.000056163 0.000019363 0.000000001 0.000502607 0.000000002 0.020060365 0.266608879 0.095692862 0.001374513 15.664863390 0.000140312 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000070 0.000000007 0.000243938 2.279216983 0.541246269 0.504988776 27.270824523 0.000064123 0.000000001 0.787427660 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000135510 0.032753857 0.000000221 0.000000150 0.123202471 116.131647173 612.194293043 0.007390420 0.080638726 0.000001669 0.000172810 0.000633358 1.718666614 0.001849440 7.213678292 0.150784753 0.000003376 0.000000923 0.000002870 0.000000052 30.374339062 0.000066716 0.000064123 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000001 0.000000002 0.000396068 7.192771311 17.736249748 0.000000123 31.715498504 0.000000059 0.000000130 42.504520680 0.214235076 0.008366199 0.000002762 0.199243571 0.000000651 3.407635444 0.000000002 0.000001069 1.725914855 0.890821770 0.000000128 0.000000190 0.000074862 56.249895845 8.931522848 0.075343866 0.000000135 0.137525489 0.302417766 0.000000001 0.000000001 0.000000025 0.000000001 0.000000638 0.000000004 0.075236654 0.628991086 0.996462350 0.332370931 4.617815849 6.218004315 5.769021086 85.159646318 0.000014941 0.000000135 65.322334310 0.000001560 0.154316000 0.089922800 0.073208200 0.079663800 0.070841500 0.101186000 0.058641000 0.076070900 0.062758600 0.077311200 0.063729400 0.046193700 0.027902200 0.008400940 0.001695310 0.000768032 0.000738613 0.001525590 0.005124800