Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000025069pdb,1x7p,A,#11332884.37e-1126.946
ENSONIP00000016543pdb,1x7p,A,#11233119.44e-1126.794
ENSTRUP00000003564pdb,1x7p,A,#11194123.01e-1026.299
ENSGACP00000014524pdb,1x7p,A,#11152764.66e-1029.24
ENSPMAP00000001757pdb,1x7p,A,#1111767.68e-1026.257
FBpp0074739pdb,1x7p,A,#11304001.36e-0925.912
ENSLACP00000008085pdb,1x7p,A,#11202852.7e-0927.011
ENSXMAP00000019155pdb,1x7p,A,#11182909.25e-0926.425
ENSPFOP00000010304pdb,1x7p,A,#11242961.54e-0826.425
ENSAMXP00000004153pdb,1x7p,A,#11274222.77e-0824.359
ENSDARP00000091013pdb,1x7p,A,#11362873.83e-0822.93

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0350.0640.9010.0950.3560.549

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3699690402476780.2678018575851390.012383900928792600.01083591331269350.01238390092879260.01238390092879260.314241486068111

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)