Protein MRPL1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSBOP00000001209	pdb,3u4m,A,#1	88	309	2.21e-17	27.111
ENSSBOP00000001209	pdb,3umy,A,#1	88	309	3.13e-17	27.111
ENSSBOP00000001209	pdb,4qvi,A,#1	88	309	3.56e-17	27.111
ENSSBOP00000001209	pdb,1ad2,A,#1	88	309	5.2e-17	27.111
ENSSBOP00000001209	pdb,4qg3,A,#1	88	299	6.95e-17	26.977
ENSSBOP00000001209	pdb,3tg8,A,#1	93	309	8.52e-17	27.273
ENSSBOP00000001209	pdb,3u56,A,#1	88	309	9.36e-17	27.111
ENSSBOP00000001209	pdb,4reo,A,#1	88	309	9.4e-17	27.111
ENSPFOP00000013153	pdb,3qoy,A,#1	104	316	1.05e-16	29.224
ENSLOCP00000008988	pdb,3qoy,A,#1	99	313	1.05e-16	28.959
ENSRNOP00000036682	pdb,4qvi,A,#1	90	301	1.81e-16	26.047

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.016	0.032	0.953	0.022	0.56	0.418

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.449897750511247	0.20040899795501	0.016359918200409	0.00204498977505112	0.00408997955010225	0	0.00408997955010225	0.323108384458078

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.049525988 24.951256211 2.292711170 20.233752473 0.035447941 7.833422908 13.426192469 0.057026660 0.161357529 5.300044130 67.172207090 0.020541981 0.325010275 0.056583630 0.008426828 49.961658111 0.250058350 0.441324966 0.471776361 7.364862477 7.562347172 174.951498116 0.008545835 0.279844140 0.122810879 0.005001499 8.577766401 0.019476377 14.216374043 0.000010363 0.025199330 0.093851733 0.229441598 0.241336198 0.088849341 6.717737233 5.532964348 0.000000001 0.004437609 0.004998062 0.019932204 0.016254387 0.487633259 0.001702382 8.176089667 36.104391537 0.000000001 0.067964181 0.000005623 0.078978477 0.043158753 0.056093134 0.283329842 0.007144349 5.329442183 2.927953535 0.000000001 0.019093136 0.029996775 0.000501786 0.174592290 0.009697086 0.001608850 0.000043308 0.000617306 5.460778305 8.207752561 0.000000664 0.000000065 0.048463216 0.000321512 0.001379930 0.087873851 0.032205592 0.338647071 0.015488079 0.089257610 6.095113284 17.600015482 0.000000001 0.081724732 0.000012168 0.000288100 0.001761241 0.127801639 0.000039673 0.000009321 0.180653759 0.011210899 0.000038505 10.935377608 810.894660197 0.000027460 0.000048229 0.000000881 0.000006880 0.182198840 0.014209461 0.032785124 0.000007470 0.000000146 1.997784875 0.000073894 0.223938357 60.652058082 4.319328666 0.120327667 1.919714837 0.038337699 0.000000064 0.000000102 0.000000022 0.000007605 0.848278136 0.000094789 0.054412293 0.000002457 0.000001518 1.551820199 156.548672566 2256.631816269 1.323650476 0.910581392 0.035675732 0.000005239 0.046834983 0.000402507 2.232268711 0.000772462 0.000847920 0.014083573 0.000255302 0.122367769 0.113008018 443.322606597 216.334710940 11.568993628 1.229348918 0.000000002 0.000000001 0.000000002 0.000025485 0.932570144 2.428234202 0.000187948 0.000000299 1.137864662 0.000595371 3.283453402 0.000083207 37.574751944 0.000116161 119.365190094 1.684297485 0.000000001 0.548939332 0.000000487 0.000000758 1.333475692 0.000025951 0.000000703 2.622984043 0.037685103 1.087228620 0.000021382 6.156471549 0.027921444 45.085478681 20.118274099 0.012943744 0.000023771 119.044065353 0.000004634 0.000000236 0.000000001 0.000000699 0.097943564 0.000506528 0.031608228 0.496932408 0.036754416 0.000165633 0.129562593 1.480084788 3.122633237 2.454890721 55.338075035 0.013013005 0.000047172 80.446575888 0.000000827 0.110539000 0.063262000 0.070699600 0.076405500 0.074225500 0.087658500 0.070660400 0.074015700 0.079016900 0.092997000 0.093398100 0.069821000 0.023835300 0.002983200 0.002731790 0.001003450 0.000996056 0.001557630 0.004192240