Protein MRPL11

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSXETP00000044454	pdb,2k3f,A,#1	16	156	1.67e-32	46.809
ENSDORP00000025008	pdb,2k3f,A,#1	26	156	1.58e-31	47.328
ENSDORP00000025008	pdb,1mms,A,#1	20	156	1.65e-31	45.985
ENSDORP00000025008	pdb,2jq7,A,#1	20	156	1.75e-31	45.985
ENSXETP00000044454	pdb,1mms,A,#1	20	156	2.33e-31	46.715
ENSXETP00000044454	pdb,2jq7,A,#1	20	156	2.56e-31	46.715
ENSECAP00000011538	pdb,2k3f,A,#1	20	156	1.02e-30	45.255
YNL185C	pdb,2k3f,A,#1	10	157	1.18e-30	41.892
YNL185C	pdb,1mms,A,#1	10	157	1.22e-30	41.892
YNL185C	pdb,2jq7,A,#1	10	157	1.25e-30	41.892
ENSECAP00000011538	pdb,1mms,A,#1	20	156	1.44e-30	45.255

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.061	0.149	0.791	0.282	0.475	0.243

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.5625	0.18359375	0.0078125	0.00390625	0.01171875	0.05078125	0.00390625	0.17578125

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000044028 0.004628072 2.035770538 4.306854755 0.000000410 5.742673597 0.328590612 0.102337312 0.730994106 8.256563871 21.385964681 0.003408522 0.281273650 0.573978163 0.030438066 153.996222378 0.251275595 0.009180173 0.045815448 5.824633531 6.324525917 0.129068319 0.000000001 0.001401512 0.154101577 0.000416036 5.889813341 0.004188126 0.015918715 0.014091955 0.116152493 0.002581245 0.000085128 0.378553684 0.000000193 6.326326881 35.497717136 0.000000001 0.027774718 0.080162356 0.002247396 0.584017792 0.197238992 0.000029660 5.997102351 0.040018668 0.000000001 0.090739888 0.003644016 0.159482683 0.148773673 0.000078732 0.332241924 0.010743836 5.595730889 3.609632496 0.006734394 0.004690724 0.000020150 0.000001572 0.012802741 0.314140057 0.460330554 0.076982607 0.053759295 6.541599058 112.838632131 0.000000001 0.000001209 0.173594740 0.005831943 0.133185476 0.274454747 0.001497318 0.000153616 0.178415063 0.021488321 8.723411662 0.035257719 0.000000001 0.000000002 0.000000684 0.000000004 0.000016212 0.287926191 0.000000001 0.000377136 0.703259742 0.008624235 0.000000001 11.976320196 0.220160087 0.000000001 0.185735886 0.000000001 0.000000051 0.000000010 0.000269231 0.000000001 0.000000001 0.000000434 0.000000009 0.208412713 0.000000575 11.221440294 345.368450250 0.008561179 0.000997828 0.000000001 1.743366275 0.485824913 0.262481275 0.000000001 0.000000001 0.409857867 0.452651389 0.000000150 1.401543083 0.000015468 56.763539499 0.000044028 0.000000001 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.885114365 0.000000004 28.730717510 0.066188197 9.873066610 0.000000001 0.000000002 0.000000001 1.522118700 0.000000001 2.216573521 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000066018 0.000000004 0.241316991 2.617758647 184.911031377 0.036913181 0.000000001 0.000000002 0.720544580 0.000000001 0.000000001 1.007921348 0.000000001 0.000000001 0.000000001 0.000000001 0.000000006 2.894600318 2.073927224 0.000005305 0.000000020 0.000000092 0.000000820 317.336996482 0.000000001 0.000000002 0.000135608 0.000000001 0.005450603 0.371959458 0.323244122 0.262108933 0.005914815 0.000000001 0.169397077 0.063207316 0.000000004 4.355594385 16.645546472 0.000000092 21.821661493 111.704552600 0.000002271 0.096504000 0.064086700 0.066767000 0.074283300 0.080708500 0.077638300 0.083042500 0.075578500 0.095495300 0.094476900 0.083302500 0.054164300 0.024313100 0.011675100 0.004976280 0.001092520 0.000999571 0.002544480 0.008348890