Protein MRPL12

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YGL068W	pdb,1rqs,A,#1	122	193	3.91e-12	52.778
YGL068W	pdb,1rqu,A,#1	122	193	1.29e-11	52.778
YGL068W	pdb,1rqv,A,#1	122	193	1.29e-11	52.778
YGL068W	pdb,1ctf,A,#1	138	193	2.08e-11	57.143
ENSOANP00000027427	pdb,1ctf,A,#1	83	139	9.32e-11	45.614
ENSOANP00000027427	pdb,1rqs,A,#1	83	139	1.17e-10	45.614
ENSOANP00000027427	pdb,1rqv,A,#1	83	139	4e-10	45.614
ENSOANP00000027427	pdb,1rqu,A,#1	83	139	4e-10	45.614
ENSCINP00000023952	pdb,1rqs,A,#1	109	183	7.48e-10	44
ENSDARP00000129769	pdb,1rqs,A,#1	124	196	1.24e-09	45.205
ENSTRUP00000030462	pdb,1rqs,A,#1	122	191	1.82e-09	51.429

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.144	0.166	0.69	0.295	0.271	0.434

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.233333333333333	0.183333333333333	0.00555555555555556	0.00555555555555556	0.0138888888888889	0.00277777777777778	0.00833333333333333	0.547222222222222

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.007098108 0.596978181 3.232752505 15.713754851 0.000766022 6.264443814 55.624105299 0.083287374 0.097616318 6.574462118 132.781416404 0.356311506 0.049153373 0.068862362 1.088996764 79.480260630 0.000243478 0.002772997 1.069250614 7.287342900 7.760525910 103.926760159 0.000000001 0.062031866 0.015795178 0.157166008 6.672465439 0.687989923 3.759348172 0.001606310 0.059644761 0.016894459 0.553378474 1.051404907 0.003225633 7.987060509 12.081871197 0.000000515 0.158470672 0.054136524 0.000000803 0.570792149 0.002991528 0.394760925 4.623047902 3.823471038 0.044916874 0.004036531 0.000837019 0.039568492 0.214951718 0.000006979 0.157463493 0.866566826 4.058046801 0.008599558 0.000000019 0.015323892 0.000000164 0.000000001 0.112221917 0.000012732 0.000706607 0.000023381 0.074769926 3.975571487 0.299471308 0.000000001 0.001791121 0.000015471 0.000000066 0.318617944 0.000004375 0.000539878 0.000000002 0.058538726 0.000179892 4.020776632 0.000042228 0.209291527 0.000000001 0.000000001 0.000000001 0.041821386 0.000000001 0.000000001 0.000000002 0.000000002 0.000000001 0.000000001 5.027584425 0.000042228 0.000000001 0.178050880 0.000000124 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000002 0.347011392 0.000000001 0.000000001 8.607173520 0.000042228 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.356111572 0.000001172 0.222337490 0.000000001 0.636197328 1.772227515 6.816548136 0.000042228 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000057090 0.000086786 0.000000001 0.000000001 0.287324076 0.000000199 234.093585116 18.954060411 0.000000001 0.000000001 0.167866428 0.000000003 0.302710635 0.000008868 0.205049240 0.000000002 0.474453546 0.549919671 0.019194934 0.000000001 1.651633985 0.000000020 0.000005072 384.731656427 0.000042228 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000430 2.716111013 0.905334197 0.000000001 0.000000001 0.000000001 0.000000004 0.000000020 27.555439557 0.000000077 0.000000020 93.631630287 0.000000001 0.000000012 0.000198504 0.968859089 0.990779149 0.038851364 0.000020829 0.000000363 0.000000169 0.000001130 0.000000002 1.285810189 0.000000004 15.846563293 30.288075120 0.000073372 0.000000085 0.000000067 0.000002368 0.077533000 0.102241000 0.089503900 0.081699600 0.074613500 0.085026100 0.067637900 0.064302600 0.064827000 0.085211900 0.088695800 0.073139100 0.027604300 0.004974820 0.003371690 0.001294050 0.005026830 0.001499720 0.001794450