Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000003616pdb,1c04,D,#1311409.09e-0933.6
ENSAMXP00000003616pdb,1whi,A,#1311409.09e-0933.6
ENSTNIP00000019732pdb,1whi,A,#1351487.34e-0832.558
ENSTNIP00000019732pdb,1c04,D,#1351487.34e-0832.558
ENSXETP00000050692pdb,1c04,D,#1311408.19e-0833.333
ENSXETP00000050692pdb,1whi,A,#1311408.19e-0833.333
ENSORLP00000014682pdb,1c04,D,#1351481.07e-0733.077
ENSORLP00000014682pdb,1whi,A,#1351481.07e-0733.077
ENSFCAP00000009046pdb,1c04,D,#1321452.23e-0732.308
ENSFCAP00000009046pdb,1whi,A,#1321452.23e-0732.308
ENSPSIP00000017592pdb,1whi,A,#1341473.15e-0731.538

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1420.1320.7270.1730.4550.372

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2835820895522390.0547263681592040.009950248756218910.004975124378109450.0074626865671641800.002487562189054730.63681592039801

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)