Protein MRPL19

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSJJAP00000006903	pdb,2zjr,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,2zjq,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,4ioc,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,3pio,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,3dll,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,4io9,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,3pip,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,4ioa,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,3cf5,M,#1	91	191	6.33e-07	31.429
ENSJJAP00000006903	pdb,2zjp,M,#1	91	191	6.33e-07	31.429

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.032	0.075	0.893	0.072	0.598	0.33

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.476712328767123	0.298630136986301	0.0191780821917808	0	0	0	0	0.205479452054795

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

12.756089395 9.208504227 2.814467215 40.043609274 0.020655700 6.869953956 16.817360007 0.242932960 0.015171492 6.496884710 22.774085544 0.042542503 0.066610839 0.242828593 0.197597734 123.842805725 0.087651174 0.378465561 0.115415495 4.584184636 4.789825793 50.303172345 0.034392892 0.004443780 0.472175739 0.002369941 5.703771169 0.086379418 15.227588516 0.014335799 0.007129226 0.003647755 0.023704305 0.142374865 0.291356141 6.738807788 12.993303758 0.001601594 0.098645321 0.051305548 0.000017383 0.006728765 0.109444868 0.013598299 5.036157860 30.235958818 0.031652690 0.000003455 0.003296344 0.000004934 0.147198119 0.166866185 0.000828775 0.006363076 5.668331901 13.023771658 0.038436222 0.071465295 0.000425308 0.049135101 0.167809278 0.066816306 0.148646531 0.022151039 0.057507626 5.895953690 20.994308195 0.000000001 0.000001277 0.000518883 0.000000249 0.017397827 0.024116934 0.349254950 0.161743839 0.061957430 0.390139481 9.230826426 11.099774002 0.031506111 0.000011071 0.000121234 0.073520571 0.006100152 0.177641179 0.000915939 0.171603339 0.012291636 0.017018439 0.000477867 10.222237631 0.000141640 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000568264 0.185431675 0.144111983 0.153816505 0.625047276 14.483333333 0.148382858 0.832212930 0.003378978 0.000072973 0.006364681 0.000000027 0.014491031 0.000000001 0.000000003 0.000000001 0.000000001 0.017813950 0.000000002 0.000000056 60.609196286 247.678078179 0.208886642 2.352145312 0.000509301 0.153557832 0.000001846 0.545599828 0.000000674 0.000267372 0.118990630 1.029061778 0.403938659 1.246005732 0.000000079 0.000000011 0.000000084 0.000764156 0.000000001 0.001439574 0.077430586 4.004380227 0.000000001 0.000000056 0.000000001 0.000000001 0.041187756 1.853965782 0.000183704 0.000085529 0.000000050 0.000000011 0.000000084 0.000062531 0.263480372 0.000000001 0.000000001 0.000000001 0.000002077 0.000003608 0.712573597 0.000000650 0.026675542 2.251875930 0.000000001 0.000000002 0.000000002 2.868827930 14.087001135 80.133584576 0.000000060 0.000000137 173.073574956 0.000000399 0.000068664 0.333053710 0.000005866 0.000011973 0.179450541 0.460075460 0.011680302 0.000078764 0.001387462 0.000000002 0.921740921 0.000000004 2.969812950 37.983529055 0.000000060 0.000000137 82.080155582 0.000001195 0.087052000 0.070215900 0.068902100 0.081639600 0.090582000 0.102246000 0.075934500 0.089081600 0.093460300 0.086305800 0.065900600 0.047593200 0.024060000 0.009238730 0.001188760 0.001664860 0.000730580 0.000990349 0.003212210