Protein MRPL2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YEL050C	pdb,4wwt,B,#1	93	373	3.15e-68	45.583
YEL050C	pdb,4wwe,B,#1	93	373	3.15e-68	45.583
YEL050C	pdb,3pip,A,#1	114	373	1.35e-56	45.42
YEL050C	pdb,3pio,A,#1	114	373	1.35e-56	45.42
YEL050C	pdb,4ioc,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,3cf5,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,4ioa,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,4io9,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,2zjp,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,2zjq,A,#1	123	373	1.56e-53	45.059
YEL050C	pdb,2zjr,A,#1	123	373	1.56e-53	45.059

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.056	0.091	0.853	0.051	0.552	0.397

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.277439024390244	0.172256097560976	0.0106707317073171	0	0	0	0.00152439024390244	0.538109756097561

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.003257431 2.732546437 2.420991697 29.875307731 0.000002623 4.725679994 45.243784741 0.111771489 0.096185373 4.430111502 27.963634862 0.018669629 0.018962716 0.123798559 0.014529496 57.690044747 0.043010057 0.048688966 0.688872457 4.146942166 5.456823626 82.239867463 0.000011263 0.068785904 0.039880437 0.262803894 4.746100856 0.229030878 11.858281249 0.004027377 0.000286106 0.037055428 0.112065216 0.667046392 0.214359052 5.484421282 32.797008624 0.007718548 0.000969452 0.026467658 0.002207586 0.310408652 0.297489257 0.046896450 5.710049195 29.264749145 0.000000196 0.000005591 0.000115202 0.068595067 0.455514468 0.048331844 0.100953790 0.113984766 5.686924385 34.641071032 0.018620395 0.000042564 0.022451776 0.064909987 0.079165399 0.057482888 0.309741192 0.255304293 0.169870172 8.536932866 47.042171380 0.000000001 0.141226280 0.091291718 0.194807328 0.020997525 0.015582576 0.014713011 0.005098726 0.468086773 0.759015695 13.245837098 0.065454667 0.000000001 0.055704815 0.000000001 0.000000002 0.000000057 0.000005640 0.038104423 0.000172965 0.000065541 0.000020104 1.171080786 18.271838985 0.003914904 0.000000001 0.239426883 0.000000021 0.000000001 0.000000001 0.000001433 0.219887908 0.000000019 0.000000001 0.000000001 0.000000002 5.719448328 39.424756757 3670.370618868 0.000011529 20.799961212 1.374743604 3.118561656 0.543457688 0.943470738 8.318925919 0.321274697 0.971157099 0.702377920 0.397464695 26.592296816 0.020348300 0.001302823 295.865439700 0.000000001 0.000284402 0.135087722 0.002629224 0.015317250 0.009646918 0.045656543 3.181534159 0.026021266 1.300702497 0.016077695 0.018879989 0.000015553 0.001933012 4.744683248 0.004519966 0.000000001 0.000000002 0.000000001 0.000000001 0.004693307 0.000001243 0.000151305 0.000000100 0.000000001 0.000021330 0.000000044 12.669139079 0.000000010 0.000000025 0.000000331 589.346439712 0.000025806 0.296277628 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000210889 5.615851876 3.166831591 0.000004926 0.000000331 0.017677228 189.983327875 6.678365169 0.000000001 0.000000002 0.000000001 0.000000015 0.696764381 0.027195307 0.021835011 0.003270213 0.000018504 0.194163872 0.703989349 0.733824656 0.000115727 0.000000025 0.000004007 31.722063329 1124.700050612 145.706572999 0.000003875 0.085510000 0.063938100 0.073567900 0.107151000 0.100599000 0.105188000 0.095136200 0.100824000 0.088101400 0.084014600 0.052577500 0.025319400 0.009954050 0.003947550 0.000301782 0.000540195 0.000671780 0.001537350 0.001115550