Protein MRPL36

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YPL183W-A	pdb,3pio,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,4ioc,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,2zjq,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,2zjr,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,3dll,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,4io9,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,2zjp,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,4ioa,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,3cf5,4,#1	56	93	5.12e-10	65.789
YPL183W-A	pdb,1dgz,A,#1	56	93	4.37e-09	60.526
YPL183W-A	pdb,1dfe,A,#1	56	93	4.37e-09	60.526

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.055	0.067	0.878	0.081	0.282	0.637

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.260355029585799	0.29585798816568	0.0355029585798817	0.0177514792899408	0.00591715976331361	0.0236686390532544	0	0.36094674556213

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.006365875 2.669260964 2.782299892 9.459767644 0.000901798 3.516278826 69.671263250 0.000912609 0.082358854 3.582599819 93.447324065 0.051544218 0.295897286 0.126978815 0.564294716 37.880066517 0.162105283 0.177358179 0.484333478 3.559448795 6.443978808 104.545300286 0.000001060 0.100853701 0.174774926 0.835283704 6.151663790 0.098393631 15.124718605 0.000000001 0.124301211 0.000395763 0.143454256 3.246407524 0.059948854 3.808380343 2.266247356 0.000384722 0.000510237 0.000000414 0.076439524 0.002243788 0.000007637 0.891302131 5.735395089 6.317695902 0.000000001 0.111338164 0.000020464 0.009930387 0.004157747 0.000074733 0.004486722 1.213089699 7.971921993 0.002908687 0.000000001 0.000000002 0.087165735 0.000002870 0.000021563 0.001019613 0.000000001 0.130048185 0.434233630 10.001029459 0.000011312 0.000000001 0.121976414 0.008619934 0.000000001 0.000000001 0.111472267 0.000000001 0.318419553 0.000000002 0.000000031 8.568316104 0.000011312 0.325859850 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.220129050 0.000000002 0.000000002 1.086883089 0.005767486 10.803134855 0.000011312 0.000000001 0.000000001 0.000000001 0.000000001 0.289383892 0.000000001 0.000000001 0.265779971 0.714899760 0.000000028 0.000071687 2.936103912 17.209606181 0.000011312 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 1.691248330 5.584381928 11.643855727 0.002323050 0.000011312 0.000000001 1.367046256 0.000001267 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 0.000000004 0.000000006 0.000000010 0.000000015 0.000000059 0.000011312 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 0.000000004 0.000000006 0.000000010 0.000000015 0.000000059 219.262351523 0.000011312 0.000000001 0.000000001 0.000000001 0.000000001 0.000000157 0.000000001 0.000000001 2.131987570 0.000000002 0.000000003 0.000000004 0.000000006 0.000000038 44.206764009 0.000001653 0.000000086 0.000000042 0.000011312 0.229709920 0.000000001 0.000000001 0.000000001 0.248020716 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 1.034110981 1.776301246 2.781826609 4.603844624 17.219694785 0.000000086 0.000000042 71.999678088 0.000008840 0.093798300 0.133302000 0.119516000 0.133308000 0.083995000 0.119462000 0.088244600 0.065103100 0.064071500 0.031084300 0.022306600 0.016013500 0.009536360 0.006863090 0.001699130 0.001161800 0.002399300 0.001491090 0.006634670