Protein MRPL38

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMGAP00000004412	pdb,1bd9,A,#1	187	331	8.17e-20	34.228
ENSMGAP00000004412	pdb,1beh,B,#1	187	331	9.03e-20	34.228
ENSMGAP00000004412	pdb,2l7w,A,#1	187	331	9.04e-20	34.228
ENSMGAP00000004412	pdb,1bd9,B,#1	187	331	9.27e-20	34.228
ENSMGAP00000004412	pdb,1beh,A,#1	187	331	1.04e-19	34.228
ENSLOCP00000014307	pdb,2jyz,A,#1	164	331	1.07e-19	34.078
ENSMGAP00000004412	pdb,1kn3,A,#1	175	331	3.03e-19	32.544
ENSPSIP00000012184	pdb,1bd9,A,#1	190	331	1e-18	35.374
ENSPSIP00000012184	pdb,1beh,B,#1	190	331	1.02e-18	35.374
ENSPSIP00000012184	pdb,1beh,A,#1	190	331	1.07e-18	35.374
ENSPSIP00000012184	pdb,2l7w,A,#1	190	331	1.08e-18	35.374

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.027	0.059	0.914	0.045	0.564	0.391

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.428051001821494	0.24408014571949	0.0145719489981785	0	0.00182149362477231	0.00182149362477231	0.00182149362477231	0.307832422586521

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.219861280 7.952281028 2.359619341 14.389216377 0.000307002 6.201446152 197.340135836 0.083567208 0.027403584 6.623830380 45.176363170 0.000163929 0.013668044 0.013455964 0.088903131 187.777119241 0.073057433 0.570490334 0.156295451 6.288605884 8.188744661 3.427804831 0.021902687 0.000006951 0.130945269 0.001650903 7.944592069 0.000013090 20.283126161 0.021570370 0.102603600 0.045617418 0.110123918 0.096378133 0.022659350 6.369210153 31.842762863 0.018254806 0.038426503 0.000001692 0.046198324 0.009940849 0.214561126 0.000762768 6.424276320 21.027904146 0.000019442 0.083337881 0.000025938 0.076405555 0.005088137 0.013591294 0.027837371 0.002236106 5.929584143 1.638599667 0.002954303 0.001591439 0.014940649 0.000006080 0.065206211 0.009909354 0.142265963 0.007859986 0.000147489 5.782855527 20.641779330 0.000000001 0.043281591 0.096952979 0.003748054 0.152504538 0.222436363 0.057038795 0.153086428 0.056363693 0.026518751 7.834851539 1.589495098 0.003261019 0.000000762 0.102593113 0.000150746 0.037103927 0.068314265 0.024068184 0.000000001 0.000000001 0.000000001 0.000000001 11.341086279 244.586563721 0.581631888 0.946636083 1.460869828 0.542098237 0.000007656 0.026317924 0.000001245 0.532428990 0.000080849 0.000000027 0.589351018 3.072721877 15.659611146 0.000328261 0.518258658 0.000000206 0.000000001 0.915150978 0.000000001 0.000000001 0.000000001 0.000000003 0.000000001 0.000000001 0.882065939 0.000000002 0.000000006 0.000000972 0.009266996 0.090830943 0.000071481 0.000000001 0.305631969 0.000000001 0.000000001 0.000000923 0.437333911 0.202126449 0.000000001 0.000000001 0.000000002 0.000000006 0.000008846 405.005564528 0.158619530 0.000000001 0.000000001 0.000000001 0.099530918 0.000000001 0.742028338 0.682037412 0.000000001 0.451755212 0.000000001 0.000000001 0.000000002 0.000000006 18.840626247 0.000000209 243.536358959 22.243624656 0.000000001 0.000000001 0.000000002 1.807016280 1.239228247 0.026722972 0.000028170 1.362970195 0.000064884 0.526469169 4.765678294 0.000008283 9.411975681 0.000407662 613.840611847 0.053165723 0.000000065 39450.246684180 0.001914179 0.146674313 0.007996404 43.333204079 15.305422008 87.963538276 1.955752811 8.686428167 59.057745956 11.075872137 0.020775567 0.654975120 0.000001064 0.063604545 0.000000209 0.001347968 0.065903436 0.911126024 0.000001249 0.098671000 0.075856500 0.072812100 0.090261500 0.074588600 0.080632500 0.081338500 0.092796600 0.099329900 0.090556300 0.077986800 0.040775900 0.017286700 0.002179970 0.000478028 0.002235350 0.001543440 0.000588620 0.000080410