Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMEUP00000005584pdb,4wwe,I,#1892131.11e-0930.469
ENSMEUP00000005584pdb,4wwt,I,#1892131.11e-0930.469
ENSTTRP00000002950pdb,4wwt,I,#1411661.25e-0831.783
ENSTTRP00000002950pdb,4wwe,I,#1411661.25e-0831.783
ENSGALP00000055550pdb,4wwt,I,#1711951.66e-0828.906
ENSGALP00000055550pdb,4wwe,I,#1711951.66e-0828.906
ENSDARP00000086688pdb,4wwe,I,#1802062.4e-0832.09
ENSDARP00000086688pdb,4wwt,I,#1802062.4e-0832.09
ENSPTRP00000002210pdb,4wwt,I,#1942193.49e-0830.233
ENSPTRP00000002210pdb,4wwe,I,#1942193.49e-0830.233
ENSSBOP00000004213pdb,4wwt,I,#1942195.31e-0830.233

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0190.0350.9460.0330.6050.362

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4791086350974930.2284122562674090.03621169916434540.005571030640668520.002785515320334260.0027855153203342600.245125348189415

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)