Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPFOP00000017660pdb,4gkk,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,3t1y,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4lf9,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4dr5,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4b3t,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,2uub,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,2hhh,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4dr4,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4b3r,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,4b3s,K,#1871932.17e-2451.402
ENSPFOP00000017660pdb,2uu9,K,#1871932.17e-2451.402

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0890.1120.7990.090.4330.477

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4915254237288140.3008474576271190.025423728813559300.008474576271186440.0042372881355932200.169491525423729

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)