Protein MRPS16

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YPL013C	pdb,4yhh,P,#1	5	96	1.95e-20	44.565
YPL013C	pdb,4dr7,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,4gkj,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,4wt8,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,4ji6,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,4duz,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,2f4v,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,1ibk,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,1n34,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,4b3m,P,#1	5	96	2.06e-20	44.565
YPL013C	pdb,2hhh,P,#1	5	96	2.06e-20	44.565

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.093	0.188	0.718	0.079	0.438	0.482

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.341911764705882	0.154411764705882	0	0	0.00735294117647059	0.00367647058823529	0	0.492647058823529

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000000431 0.000000431 2.530794929 0.000000431 0.116081875 6.298356958 23.746221350 0.155860966 0.185405262 7.469505114 0.000000431 0.060102009 0.303036353 0.496396219 0.081275303 0.000000431 0.022657844 0.000605486 0.096265476 6.625200790 5.253795095 34.362491645 0.000000034 0.000006226 0.277197286 0.000900485 5.520661554 0.000019440 0.000000446 0.000000001 0.001455414 0.032343408 0.291475334 0.727229097 0.001296023 4.750248534 0.000152753 0.000000001 0.170164129 0.000000002 0.006138303 0.205183752 0.205762641 0.089721356 6.323488976 0.000129149 0.000000001 0.000000002 0.000000002 0.055872006 0.187195796 0.000457168 0.121329886 0.008534903 6.483574009 0.000704358 0.000000001 0.000000002 0.000000002 0.000000004 0.039605633 0.000000002 0.183628424 0.000262353 0.010787370 5.995213997 0.000124276 0.000000001 0.000000035 0.000000002 0.000000002 0.034372821 0.000000002 0.055914708 0.059057214 0.157699660 0.022473898 5.132141458 0.000000621 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000002 0.000000001 0.000000001 0.000003796 0.000002908 0.143098621 10.014350682 0.026657927 0.000000001 0.000010001 0.541663441 0.000000002 0.000000001 0.000000002 0.008870655 0.000000012 0.022499889 0.000020904 1.317191098 0.679073860 26.165124461 682.330365036 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000002 0.004495186 0.000000001 0.000034349 0.000001773 1.041260165 0.148616743 22.751224693 94.652800892 0.000004945 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000002 0.000000003 0.000000001 2.672616728 0.000000222 0.027588698 1.507352720 0.132443146 22.825991130 101.328432171 0.000000431 0.000000027 7.160262270 0.000000002 0.000000002 0.000000001 0.000000002 0.000000001 0.000000001 0.000006083 0.000000001 0.000000002 3.083161800 1.857476269 0.001370301 0.000096266 208.722397611 0.000007327 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000002 0.000000020 9.003197706 0.000009339 0.000001593 0.000054629 8.404027811 5.184361102 54.850622071 361.546425331 0.000678700 0.000000652 0.000219174 0.000000001 0.000000002 0.000000002 0.000000002 0.000000001 0.000000002 0.001844539 0.000000001 0.033317611 0.638313751 0.000000501 0.000049876 8.363996017 2.908628026 0.000332578 17.044565933 0.000000167 0.000006350 0.000231895 0.077796900 0.057101400 0.056829200 0.062565500 0.075011300 0.064664800 0.073531100 0.071645100 0.092648900 0.097952300 0.104653000 0.099786200 0.037662500 0.011116100 0.002578980 0.002337660 0.000598631 0.000933853 0.010354400