Protein MRPS2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YHL004W	pdb,1i94,B,#1	180	373	1.33e-37	35.981
YHL004W	pdb,4yhh,B,#1	182	373	2.47e-37	35.849
YHL004W	pdb,4lfc,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4lf7,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4kvb,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4lf4,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4dr4,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4lfb,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,3oto,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,2vqe,B,#1	184	373	1.51e-36	35.714
YHL004W	pdb,4dr7,B,#1	184	373	1.51e-36	35.714

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.04	0.082	0.878	0.052	0.399	0.549

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.316695352839931	0.135972461273666	0.0533562822719449	0.00172117039586919	0.00172117039586919	0.00172117039586919	0	0.48881239242685

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000033600 0.037993542 1.657907446 3.496483759 0.000000088 5.510911734 2.928959509 0.021221556 0.001925241 5.905938607 16.557377049 0.000379275 0.024755981 0.009416778 0.590332596 76.653708265 0.209448595 0.096920454 0.387912735 6.031628255 5.595924061 28.338076534 0.001448330 0.000075791 0.276268625 0.088526992 5.836151210 0.056708103 6.987524318 0.043488632 0.043510317 0.029907868 0.361690097 0.242396787 0.281028393 5.050566470 7.227226756 0.000022155 0.000080172 0.322418136 0.002822717 0.234783466 0.535531427 0.044733315 6.252317620 8.048209288 0.000000001 0.053736057 0.001293226 0.000124079 0.649356311 0.004678416 0.057257285 0.044985286 7.133047332 73.769147803 0.000000001 0.083261375 0.012641301 0.004970473 0.149686116 0.087899097 0.259873445 0.316219271 0.010139866 6.127117754 44.853319177 0.000000001 0.000000002 0.035731887 0.042056102 0.000544843 0.001273593 0.158820948 0.254060136 0.349874168 0.111364820 10.033915009 8.184826910 0.000000001 0.000000002 0.000000002 0.199138015 0.057869205 0.000226136 0.000390192 0.006525281 0.007390196 0.160200829 0.005092206 16.820218237 5.527906484 0.000000001 0.000000002 0.000000002 0.000000001 0.363758820 0.008700794 0.000000057 0.064324506 0.473015828 0.030315722 0.000193232 3.043900198 19.871271097 2652.061864330 0.000000001 0.000000002 0.000006153 0.000202249 0.735173925 4.569057445 0.032192310 0.000441100 0.000676700 0.009460938 1.603007204 12.568020912 3.045799340 123.613757463 9.572675132 0.000000001 0.772101066 0.029534902 0.000000001 0.029360633 0.000008551 0.000000001 0.000000001 0.114621841 0.000804919 0.341395030 0.098677866 1.971352058 0.000000115 55.150592798 0.009797526 0.000000001 0.000000002 2.216214832 0.000000001 0.000010976 0.000000001 0.000000001 0.000000001 0.000000004 2.203689649 0.316883728 1.887829599 0.046814473 0.000000015 149.356472504 294.718493623 3.397934944 0.000000001 0.000001165 1.389147419 0.000021482 0.000008326 0.000806708 0.000000003 0.000000181 0.000002311 1.848035495 0.893019069 0.430778928 7.649903469 3.620315704 3.868242552 76.763459491 14.161667760 536.753365881 0.000004686 0.347452448 0.001317165 0.000030372 0.020840789 0.354922267 0.023004106 0.899299031 0.029908912 0.010142343 0.243353952 3.587782589 3.610076602 0.843259552 0.347725766 3.695305096 0.844903876 68.765672002 0.000002976 0.105603000 0.065292100 0.058557500 0.075337700 0.079137600 0.079335400 0.084532300 0.095895800 0.091351700 0.085645000 0.072652200 0.056159200 0.032114000 0.006602380 0.001222170 0.002395150 0.001448650 0.002197390 0.004518270