Protein MRPS5

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YBR251W	pdb,1i94,E,#1	147	295	3.39e-20	37.584
YBR251W	pdb,1fka,E,#1	147	295	3.4e-20	37.584
YBR251W	pdb,2vqe,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4gkj,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4b3r,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4ji3,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,2hhh,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4b3t,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4dv2,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,4lf6,E,#1	147	287	3.93e-20	38.298
YBR251W	pdb,2uua,E,#1	147	287	3.93e-20	38.298

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.019	0.04	0.941	0.006	0.313	0.681

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.366071428571429	0.254464285714286	0.0178571428571429	0	0	0.00148809523809524	0	0.360119047619048

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.012072311 0.923228192 1.895661846 28.386686309 0.000209104 5.618011225 120.107987466 0.029934714 0.249765553 5.067979821 74.762437781 0.001703234 0.145947284 0.023481558 0.251093529 58.091064667 0.294427141 0.012554565 0.437095289 5.319639006 6.133095413 128.753108807 0.025357235 0.001908801 0.138077583 0.287691085 7.161208299 0.021935171 20.209816857 0.037099855 0.047936273 0.361064487 0.073233023 0.684606612 0.042973855 8.264443650 19.412397124 0.007673441 0.041129819 0.023837353 0.100245211 0.010076707 0.099333518 0.008147247 7.640345723 4.483044879 0.001622504 0.000023860 0.001035147 0.004595160 0.180941688 0.118248161 0.000082361 0.182403092 6.303600592 1.239770280 0.006393471 0.000000001 0.000000015 0.000052932 0.002521090 0.052240131 0.093419592 0.001094900 0.011821050 6.499991607 7.065251784 0.000000001 0.002020812 0.082354818 0.002163618 0.000026156 0.003330630 0.059155350 0.003323345 0.000905312 0.006833733 10.152077418 1.037448583 0.015708736 0.066601807 0.000000001 0.008459438 0.216030607 0.000001662 0.000411498 0.024084446 0.027657988 0.000813691 0.000000002 15.512212857 1.002384978 0.000000001 0.000002035 0.236440270 0.007751864 0.039518553 1.264803022 0.000000496 0.000000001 0.000000001 0.000000001 0.000000002 0.000000110 65.476672314 6488.536113200 0.000020369 0.242661935 4.076907432 30.146806806 3.606568204 0.567472906 19.404253114 1.365986448 0.799921264 0.170414078 0.012887988 0.190815402 0.118616654 0.010079006 4187.593349279 0.000000001 0.000500553 0.024348254 0.909315030 13.945109287 0.069507950 14.366874040 0.062754951 0.004474445 0.000165412 0.001582211 0.010261510 0.000426890 0.000023759 420.813759902 0.000747686 2.821237272 2.099774360 0.709976530 0.000341229 0.000000001 3.021260185 0.000000001 0.000000002 0.569535621 0.000000001 0.000000002 0.000000003 0.000000008 0.000000060 0.000105797 0.000000522 101.449699411 0.000000001 0.029573735 0.000508717 1.031369334 6.774819761 1.098360494 0.300881770 6.705521392 0.004032066 0.000012423 0.000000046 0.000498787 45.589859438 0.000000294 10.285639552 2.192714582 0.000000390 0.253870231 0.126704886 0.000000020 0.000000001 0.000000012 0.009717008 0.054921387 0.000236182 0.000022253 0.212722880 0.000000001 0.000000002 0.000243963 7.799989019 0.000000060 0.000015782 0.000766972 0.000000413 398.855210095 0.000002939 0.116870000 0.084027600 0.085554800 0.090738300 0.084790300 0.101128000 0.073329800 0.076593000 0.090682300 0.083399800 0.065400900 0.030255000 0.012748800 0.001653040 0.000282909 0.000191698 0.000256516 0.000330541 0.001763060