Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPSIP00000020658pdb,3ag4,A,#13511084.54
FBpp0100176pdb,2occ,A,#12505076.984
ENSEEUP00000014596pdb,3ag2,A,#12514091.618
ENSCINP00000036599pdb,2dys,N,#111511069.781
ENSMMUP00000031382pdb,2ein,A,#13513090.607
ENSOANP00000024995pdb,2y69,N,#12512092.172
ENSFCAP00000025711pdb,3abm,N,#12514097.076
ENSSBOP00000000003pdb,3omn,A,#14505051.024
FBpp0100176pdb,1v55,N,#12505076.984
ENSLOCP00000022473pdb,3asn,A,#13514088.477
ENSMGAP00000019825pdb,3abk,N,#13515088.499

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.3310.4950.1740.2780.6350.087

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.9126559714795010.00356506238859180.00891265597147950.00178253119429590.00178253119429590.00178253119429590.00178253119429590.0677361853832442

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)