Protein MT-CYB

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOCUP00000026191	pdb,2fyu,C,#1	2	379	0	85.979
ENSECAP00000023113	pdb,4d6t,P,#1	10	379	0	89.73
ENSMICP00000022746	pdb,3l74,P,#1	3	379	0	72.414
ENSDARP00000087881	pdb,1bgy,O,#1	1	379	0	74.67
ENSFALP00000015982	pdb,1ntz,C,#1	4	379	0	73.936
ENSCGRP00001000013	pdb,1sqp,C,#1	2	379	0	81.746
ENSPSIP00000020668	pdb,3l73,P,#1	5	381	0	74.005
ENSGACP00000027672	pdb,3l73,C,#1	3	379	0	74.005
ENSLACP00000021817	pdb,1bgy,C,#1	1	379	0	75.198
ENSCPOP00000014220	pdb,3h1k,C,#1	3	379	0	75.597
ENSACAP00000021695	pdb,3l75,C,#1	4	379	0	76.33

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.51	0.383	0.107	0.753	0.223	0.024

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.575113808801214	0	0	0	0.00151745068285281	0.00303490136570561	0.00151745068285281	0.418816388467375

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

5.604750514 0.000049104 1.840982441 0.660574176 0.071213141 2.767676908 0.000000395 0.112257237 0.229398098 2.320489474 1.176059419 0.323329831 0.213466796 0.171220232 1.360183480 0.000024025 0.184151720 0.443357378 0.483189432 3.621841470 7.056395923 0.000002598 0.382696554 0.178679892 0.112280027 0.070242683 5.273424144 1.018065510 0.000000812 0.236615057 0.164121702 0.001004537 0.145029681 0.930552880 0.531704755 6.912848283 1.787743971 0.420946078 0.562755546 0.188564544 0.005436687 1.414004094 0.182956038 0.914555532 8.447224351 0.000009904 0.003768174 0.086003158 0.631074080 0.841898927 0.172807045 0.010311226 1.125235954 1.867467257 15.525939336 0.000002497 0.235719813 0.079912494 0.280786801 0.151722113 0.057808546 0.231046421 0.922479575 1.303723410 3.848473205 13.657665918 0.000002086 0.001118533 0.005989385 0.285370716 0.657070186 4.950242405 0.973940077 1.503603991 0.941529074 2.029094516 8.021974895 48.354915679 6.820766746 0.430827739 0.027599627 0.000008422 0.000009285 0.000000428 0.000000125 0.002147745 1.333735370 0.143778532 1.570047744 3.074038075 38.732334833 0.000000033 0.453622815 0.334060002 0.526043547 1.115452987 0.000023412 0.000000257 0.000000774 0.000038928 0.001103154 3.621083252 0.000138803 0.100343733 11.926835690 0.000057183 0.691464665 0.147361941 2.223206857 0.002019864 2.643132407 0.000040351 2.961868391 0.001405781 4.293823575 0.113908053 1.446594242 41.887660701 2.453931575 44.911736292 0.000008180 0.006869538 1.364173872 0.000679120 2.181536093 2.335732747 0.000094434 0.000313460 0.001044488 0.122899857 0.005938660 0.018490991 0.356042843 1.989150805 115.085336222 168.540404230 0.000020978 0.260916257 0.000016939 6.287311031 0.000668433 0.003549072 0.000020206 0.001164324 0.000554909 0.085752739 0.019119771 0.003336388 0.009754362 0.063088884 0.002931897 63.690296963 612.855881858 0.000232612 1.854263264 0.000389434 0.000152246 0.018067742 0.005878264 0.000119512 0.000233645 0.038654585 9.372654237 0.010941506 0.004806029 0.005483013 0.138534391 0.000310544 3.897657985 120.877234770 2544.043107981 0.000000023 0.000000175 0.000000606 0.848338331 0.000403479 0.000014885 0.000019222 2.554150967 0.000013013 0.002932809 0.042815632 4.628341551 0.085174817 0.000282733 0.000002874 0.000931356 0.004433496 4.414730006 76.272906518 0.004297640 0.158951000 0.143761000 0.127402000 0.126008000 0.066974700 0.097655700 0.054883600 0.068899200 0.046067100 0.031627000 0.029630700 0.012538800 0.012913400 0.005123850 0.004251040 0.002854880 0.000922335 0.001724400 0.003513940