Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSTBEP00000004944pdb,3mvb,O,#169392088.272
ENSTTRP00000009793pdb,3mvb,O,#174396082.099
ENSCPOP00000003173pdb,3mva,O,#181403082.043
ENSNGAP00000012543pdb,3mva,O,#155378079.938
MGP_PahariEiJ_P0047974pdb,3mvb,O,#157380079.012
ENSMPUP00000008502pdb,3mvb,O,#174397081.79
ENSSSCP00000040645pdb,3n6s,A,#180418083.776
ENSOARP00000017914pdb,3mva,O,#1108430082.353
ENSVPAP00000004826pdb,3n6s,A,#157396084.706
ENSPEMP00000013955pdb,3n6s,A,#140378080.236
ENSLAFP00000000046pdb,3mvb,O,#153376083.642

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1050.1540.740.0860.4320.482

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5427974947807930.2672233820459290.02087682672233820.008350730688935280.002087682672233820.004175365344467640.01461377870563670.139874739039666

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)