Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCAPP00000005582pdb,3m66,A,#1129398091.481
ENSVPAP00000003837pdb,3m66,A,#1148417092.963
ENSFDAP00000013264pdb,3m66,A,#1154423091.111
ENSDORP00000009847pdb,3m66,A,#1140409091.111
ENSOCUP00000003693pdb,3m66,A,#1148416094.074
ENSSBOP00000020992pdb,3m66,A,#1148417093.704
ENSHGLP00100024555pdb,3m66,A,#1148417092.222
ENSTSYP00000006718pdb,3m66,A,#1148417095.185
ENSDNOP00000033898pdb,3m66,A,#1147416091.852
ENSECAP00000010800pdb,3m66,A,#1148417091.481
ENSTBEP00000002256pdb,3m66,A,#1147416094.074

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1230.3010.5770.0610.4550.485

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3567335243553010.1833810888252150.007163323782234960.001432664756446990000.451289398280802

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)