Protein MTERF4

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSPPYP00000014931	pdb,4fp9,G,#1	83	327	2.39e-172	96.327
ENSPPYP00000014931	pdb,4fp9,E,#1	83	327	2.39e-172	96.327
ENSPPYP00000014931	pdb,4fp9,B,#1	83	327	2.39e-172	96.327
ENSPPYP00000014931	pdb,4fp9,H,#1	83	327	2.39e-172	96.327
ENSNLEP00000016643	pdb,4fp9,B,#1	82	326	7.35e-172	95.102
ENSNLEP00000016643	pdb,4fp9,E,#1	82	326	7.35e-172	95.102
ENSNLEP00000016643	pdb,4fp9,G,#1	82	326	7.35e-172	95.102
ENSNLEP00000016643	pdb,4fp9,H,#1	82	326	7.35e-172	95.102
ENSCATP00000007223	pdb,4fp9,G,#1	83	327	3.7e-171	95.102
ENSCATP00000007223	pdb,4fp9,H,#1	83	327	3.7e-171	95.102
ENSCATP00000007223	pdb,4fp9,E,#1	83	327	3.7e-171	95.102

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.103	0.267	0.63	0.194	0.372	0.435

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.44165170556553	0.175942549371634	0.0197486535008977	0.00179533213644524	0.00718132854578097	0.00179533213644524	0.00179533213644524	0.350089766606822

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000000030 0.000000030 2.594630007 0.000000030 0.264061965 5.503572839 0.202608498 0.176280514 0.884336696 4.878079644 0.000000030 0.128620815 0.047486779 0.315485220 0.617081422 0.221524000 0.154908384 0.460741512 1.836590767 6.616912114 6.475478036 0.000000030 0.099979641 0.072039142 0.498922076 0.365095826 7.080667346 0.594356812 0.000000030 0.024853756 0.030404362 0.585333447 0.436879643 1.408605254 0.317219388 5.993445875 0.000000030 0.028983148 0.000466743 0.211472134 0.379951142 0.383449286 0.336073926 0.620826698 4.409930761 0.000000030 0.000083450 0.000009031 0.146807046 0.000100418 0.323443084 0.066771476 0.820544754 0.754921699 4.186480238 0.000000030 0.000032668 0.000786996 0.018117144 0.002717040 0.096576995 0.183567871 0.186248931 0.094386564 0.843894596 5.128185481 0.000000030 0.000393883 0.009224028 0.000012380 0.079454554 0.078207628 0.000003514 0.090917132 0.599401494 0.113727664 1.058606679 5.238898783 0.000000030 0.040828277 0.000000105 0.000000740 0.208600271 0.000017665 0.239152173 0.388167563 0.000304077 0.003874571 0.183046100 2.055170287 5.019833502 0.000000030 0.378209599 0.000000785 0.000000002 0.000000002 0.000000004 0.550463943 0.000000297 0.168983323 0.000001546 0.005290128 0.730315301 1.354278203 8.501121293 0.000000030 0.000000001 0.000000001 0.050158564 0.342819653 0.000000002 0.000000108 0.929079397 0.000000001 0.081632062 0.264352623 0.025531157 0.003527123 0.092290259 8.008775044 0.000000030 0.000000001 0.000000001 0.347201025 0.000000002 0.000000002 0.000000002 0.000000002 0.000000001 0.000000001 1.254248904 0.010343558 0.000000001 0.573700860 0.000000013 6.214043251 0.000000030 0.044616501 0.246086680 0.000000002 0.115855598 0.553019883 0.785595698 0.000000002 0.056979046 0.507948529 0.823163633 0.010476683 0.293093793 0.000000003 1.620998479 0.000000015 0.000000037 0.000000030 0.000000001 0.203877356 0.000000002 0.000000002 0.000043467 0.000000002 0.179117405 0.112048741 0.870113598 0.173291446 0.010005572 0.522358709 4.657300284 0.000000013 2.086486407 0.000000037 2.768510169 0.000000030 0.000000001 0.000000001 0.000000002 0.000000002 0.208947892 0.000000002 0.000000005 0.000000001 1.050637291 0.147222275 2.637617280 0.484917464 4.196901965 3.512737211 0.000002666 5.248163901 0.000000018 12.922774057 0.003338320 0.099218000 0.067845200 0.064800500 0.066151400 0.065141600 0.063003400 0.065119300 0.076691000 0.090186500 0.093965400 0.100507000 0.077142200 0.033666500 0.007464350 0.006834600 0.002710910 0.005711050 0.004627590 0.005875740