Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSTSYP00000012440pdb,1fp7,A,#1308916048.445
ENSAPLP00000010808pdb,4jjk,A,#1317938048.315
ENSAMEP00000004147pdb,4jjk,A,#1316935048.714
ENSOGAP00000004699pdb,1eg7,A,#1316924048.118
ENSAPLP00000010808pdb,4iom,B,#1317938048.315
ENSCLAP00000005629pdb,4iok,B,#1316935049.196
ENSJJAP00000018049pdb,1dia,B,#12296087.797
ENSAMXP00000012937pdb,4jjk,A,#1196815048.148
MGP_PahariEiJ_P0056187pdb,4iok,A,#1360979048.309
ENSFALP00000003370pdb,4ioj,A,#1316935049.597
ENSGMOP00000012470pdb,1fp7,A,#1319927047.377

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0510.1620.7860.0270.4550.518

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1822570911285460.3246831623415810.0639710319855160.01508750754375380.004828002414001210.001810500905250450.001810500905250450.405552202776101

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)