Protein MTIF3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
MGP_SPRETEiJ_P0075030	pdb,2crq,A,#1	148	247	6.26e-69	99
MGP_PahariEiJ_P0060421	pdb,2crq,A,#1	148	247	2.2e-56	91
ENSRNOP00000066295	pdb,2crq,A,#1	148	248	2.74e-54	86.139
ENSMAUP00000010178	pdb,2crq,A,#1	140	241	8.01e-52	81.373
ENSPEMP00000001231	pdb,2crq,A,#1	140	241	4.05e-50	78.431
ENSJJAP00000008999	pdb,2crq,A,#1	148	247	7.35e-50	78
ENSMOCP00000019153	pdb,2crq,A,#1	142	241	1.35e-49	81
ENSCGRP00001027670	pdb,2crq,A,#1	140	241	8.52e-49	80.392
ENSECAP00000014249	pdb,2crq,A,#1	146	251	1.69e-47	72.642
ENSOPRP00000000795	pdb,2crq,A,#1	151	250	1.34e-46	73
ENSNGAP00000024740	pdb,2crq,A,#1	146	251	5.38e-46	69.811

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.023	0.047	0.93	0.032	0.35	0.618

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.471544715447154	0.265582655826558	0.002710027100271	0	0.002710027100271	0.00813008130081301	0.010840108401084	0.238482384823848

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.325342793 0.000000033 3.564640893 0.000000033 0.001596044 7.435716851 0.000000033 0.080840471 0.068835181 7.203299589 0.000000033 0.200075970 0.132094109 0.080106485 0.131913718 0.000000033 0.000114151 0.164317785 0.388744639 8.556149187 8.076414369 0.000000033 0.008895645 0.302436115 0.003662222 0.092691628 9.703750419 0.075819420 0.000000033 0.043674144 0.083611197 0.026958748 0.407409512 0.595904059 0.168335438 9.600832255 0.000000033 0.000036135 0.008427083 0.012689252 0.184200171 0.114709153 0.120255531 0.032417418 7.495343816 0.000000033 0.010967584 0.021134673 0.126934533 0.000584770 0.088331506 0.000001944 0.410228981 0.143688213 5.576440107 0.000000033 0.039457430 0.000554546 0.000000083 0.000000001 0.062636098 0.000000002 0.001483070 0.261806406 0.149247008 4.066010346 0.000000033 0.000000001 0.000934815 0.000000001 0.000000001 0.113777799 0.000058971 0.000732291 0.043112393 0.146351337 0.016923428 4.816888769 0.000000033 0.001580015 0.000005432 0.000000001 0.000000001 0.000000282 0.050370491 0.065641978 0.000025174 0.000001205 0.051678050 0.000270194 5.275867172 0.000000033 0.017672766 0.056044104 0.027833970 0.000000001 0.000000002 0.000000001 0.000000002 0.369478636 0.064131520 0.267211139 0.188839105 0.001970571 7.817462074 0.000000033 0.000000001 0.461839337 0.000000001 0.137854357 0.588325216 0.324072106 0.000000002 0.000000002 0.000000001 0.288780854 0.000329518 1.229420702 0.742740420 1.746724958 0.000000033 0.000000001 0.326345700 0.000000001 0.000000001 0.000000002 0.000000001 0.000000002 0.000000002 0.547409796 0.000000006 1.619030706 0.011261197 0.000354450 1.197978714 0.000000047 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.064455555 0.000000001 0.000008061 0.000000002 0.000000001 0.155056819 0.133014663 0.000005667 0.095277933 0.000000055 0.000000047 85.392310356 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.403246683 0.020701925 0.000000026 0.655352194 0.035366191 0.102700121 1.252230309 0.229444379 0.000000002 0.954872044 0.000000047 0.000000049 8.464959873 0.000000033 0.000000001 0.000000001 0.000000001 0.000000001 0.614191420 0.000000001 0.002016725 0.247116066 0.000000073 0.083795179 1.275904680 0.185013417 0.645187785 1.716085641 0.000000047 0.000000301 34.450664947 2.567384699 0.003033170 0.076609400 0.077952000 0.068554000 0.068617200 0.063584900 0.071999100 0.062913400 0.062068000 0.067929000 0.078081700 0.095166200 0.101364000 0.065503100 0.019373800 0.002137240 0.002050290 0.003815340 0.003975680 0.005272410