Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSAMXP00000017841pdb,4req,C,#140753059.89
ENSOPRP00000013370pdb,1e1c,C,#141711046.029
ENSGMOP00000011240pdb,4req,A,#142724060.926
ENSPSIP00000011474pdb,1e1c,C,#134737059.691
ENSDORP00000001922pdb,1req,A,#140743060.197
ENSDORP00000001922pdb,2req,C,#140743060.197
ENSCCAP00000018194pdb,2xij,A,#136521098.354
ENSCCAP00000018194pdb,7req,C,#141521063.561
ENSXETP00000061010pdb,2xiq,B,#144749083.613
ENSSHAP00000001796pdb,7req,C,#161744061.939
ZK1058.1pdb,2req,C,#130734061.938

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.3710.4990.1290.6970.2150.088

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7771739130434780.02391304347826090.01304347826086960.008695652173913040.0043478260869565200.002173913043478260.170652173913043

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)