Protein NAGS

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YER069W	pdb,3zzi,F,#1	67	502	0	100
YER069W	pdb,4ab7,C,#1	67	502	0	100
YER069W	pdb,3zzg,C,#1	62	352	0	100
YER069W	pdb,3zzi,B,#1	67	502	0	100
YER069W	pdb,3zzh,A,#1	62	352	0	100
YER069W	pdb,3zzf,D,#1	63	352	0	100
YER069W	pdb,4ab7,F,#1	67	502	0	100
YER069W	pdb,3zzi,E,#1	67	502	0	100
YER069W	pdb,4ab7,E,#1	98	502	0	100
YER069W	pdb,3zzf,A,#1	62	352	0	100
YER069W	pdb,4ab7,B,#1	67	502	0	100

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.088	0.144	0.767	0.284	0.453	0.263

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.271391529818496	0.139152981849611	0.0466724286949006	0.00691443388072602	0.000864304235090752	0.0017286084701815	0.00518582541054451	0.528089887640449

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.759799799 0.000021018 2.009434571 0.000014019 0.001113624 6.164047898 0.000000014 0.138267770 0.218856157 5.207761086 0.000000014 0.041810792 0.138906952 0.076453225 1.035954389 0.000000014 0.053849162 0.113430904 0.347193021 5.615811487 6.280470512 0.000000014 0.049106837 0.012822789 0.166781116 0.011893273 5.641397619 0.452148979 0.000000014 0.000552666 0.096746714 0.056420049 0.564147701 0.741484177 0.277704131 6.076667981 0.193414469 0.000000183 0.115654228 0.066880447 0.159701078 0.058554094 0.287497132 0.336456476 5.860605896 0.000000025 0.000183574 0.053983343 0.000233152 0.257090517 0.495287818 0.006388677 0.096474521 0.313212662 5.797120628 0.000000014 0.000000220 0.003875582 0.000117645 0.003657217 0.062067857 0.322855978 0.070828869 0.676827350 0.224718402 8.248878788 0.000000014 0.015871460 0.006449811 0.000002099 0.000351595 0.047190772 0.000132439 0.072977415 0.080289502 0.396937853 0.057251152 10.642768006 0.000000014 0.000000062 0.384931530 0.000329640 0.281574136 0.000000303 0.001970854 0.000067374 0.561902066 0.544721433 0.243811239 0.000246227 12.897090547 0.000000014 0.000000001 0.000000001 0.000000003 0.000000317 0.010608867 0.000000299 0.005716827 0.085719263 0.000000092 0.000137159 1.315795706 0.755696751 10.057112761 0.000000014 0.000000001 0.347455819 0.000869645 0.000698015 0.000375416 0.250269026 0.000270743 0.027669343 1.251064581 0.000530028 0.589806710 0.009355497 8.764586797 5.205195087 0.000000014 0.000000001 0.000000001 0.000000001 0.000000001 0.000070574 0.000000167 0.000026943 0.024191840 0.024938387 0.583841009 0.125813423 0.002128644 0.000422670 2.197908487 15.768407982 0.000000014 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.160052261 0.000000002 0.000000005 0.000119955 0.001846075 0.000000125 7.490019285 6.626551759 7.702650341 0.000000014 0.353772752 0.000000344 0.000000001 0.000000001 0.000000640 0.000000444 0.000000001 0.000000152 0.000000028 0.000000007 0.000000282 2.797297013 0.000086461 4.819519782 0.000143707 31.431761822 0.000000034 0.000000014 0.000000001 0.156130908 0.000000001 0.000000001 0.008890753 0.352582540 0.000001586 0.000002067 0.000714511 0.005972859 0.864928996 0.001430005 0.000000008 0.000000015 5.209790997 1.992007411 0.000000034 84.979445807 0.007216730 0.139381000 0.078274700 0.070773600 0.083847900 0.094849900 0.089768200 0.082683800 0.091847500 0.088415100 0.072421600 0.043913200 0.023781100 0.012151400 0.006647820 0.003108570 0.002838880 0.002918150 0.001688220 0.003472680