Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSNGAP00000001250pdb,1x55,A,#1404701.31e-6933.484
ENSNGAP00000001250pdb,1x54,A,#1404701.31e-6933.484
ENSDORP00000020326pdb,1x54,A,#1414707.86e-6832.955
ENSDORP00000020326pdb,1x55,A,#1414707.86e-6832.955
ENSECAP00000015406pdb,1x55,A,#1404709.92e-6833.107
ENSECAP00000015406pdb,1x54,A,#1404709.92e-6833.107
ENSMOCP00000005464pdb,1x54,A,#1404701.78e-6732.653
ENSMOCP00000005464pdb,1x55,A,#1404701.78e-6732.653
ENSMPUP00000007973pdb,1x55,A,#1414702.1e-6732.727
ENSMPUP00000007973pdb,1x54,A,#1414702.1e-6732.727
ENSOARP00000006726pdb,1x55,A,#1334632.14e-6732.2

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.020.0420.9390.0260.4330.541

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.456355283307810.266462480857580.006125574272588060000.006125574272588060.264931087289433

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)