Protein NDUFA13

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSAMEP00000012514	pdb,1jzt,A,#1	107	255	6.2e-15	34.132
ENSP00000452549	pdb,1jzt,A,#1	105	231	1.64e-13	35

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.031	0.059	0.911	0.052	0.247	0.7

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.278048780487805	0.0731707317073171	0.0024390243902439	0.0024390243902439	0	0.0048780487804878	0.0170731707317073	0.621951219512195

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.507257517 0.558566363 2.086731738 4.881656764 0.000070883 5.702638580 44.508109306 0.002851421 0.083049853 5.402879321 39.000290855 0.182001475 0.004981059 0.001289975 0.105673885 40.022783618 0.004722899 0.149026167 0.547494251 5.886348588 7.133550604 52.318250440 0.034144269 0.001041584 0.006614997 0.033230614 8.358361787 0.003225205 5.290037534 0.000000407 0.000003913 0.258312496 0.025150870 0.453715899 0.002677063 6.434359048 14.505131508 0.000000003 0.000000028 0.000031278 0.008114349 0.055518912 0.133156131 0.014191701 7.658860131 11.021384745 0.050883556 0.004999335 0.120945577 0.033741569 0.021469858 0.228538944 0.061581832 0.119017843 5.195787434 8.514702012 0.001461967 0.164019814 0.005530874 0.001171276 0.052875771 0.007059590 0.000260324 0.125766812 0.342802647 4.314860489 19.754297032 0.361609290 0.000000108 0.000000073 0.000013260 0.304213702 0.024173622 0.265888958 0.000236672 0.010199683 0.303426111 5.099917850 2.039424662 0.002264391 0.000003383 0.000000001 0.000039027 0.001022213 0.058289084 0.000080791 0.000002104 1.114064131 0.204849806 0.012866381 12.786743005 45.762454814 0.000018785 0.268310237 0.003129559 0.180626994 0.000117191 1.395719871 0.000002104 0.000005081 0.042429483 0.000002870 0.000000010 0.000000755 51.578340535 0.012183003 0.000000001 0.000000137 0.000000033 0.000000278 0.000000034 0.000000105 0.000000400 1.100722664 1.705450211 0.000000007 0.000000002 0.000000003 0.000000006 77.013566783 26.275744103 1.462036761 0.002234613 0.000029302 0.419155986 1.700404763 0.000390461 0.000424595 0.000000194 0.000000054 0.000005413 3.630227538 0.008354258 13.200601454 0.000173853 0.000259184 0.078582707 0.000000001 0.162695561 1.098266143 0.000000037 0.047718721 0.000001285 2.391900730 0.000000077 0.000000001 0.306726546 0.504999713 0.000000003 0.000000006 0.000000025 49.472773896 109.706175126 1.478823008 0.000000001 0.000003062 3.159074606 0.103800129 0.000001906 0.002660717 0.000000089 0.000136546 1.883579252 0.000069315 0.000250293 0.000002058 0.000006027 42.599947772 87.995215640 0.000002951 0.000000020 3838.430215648 0.000603039 0.000031360 0.003472065 0.282800474 1.894041310 1.416145695 9.076106190 1.344321689 1.666147302 0.049410900 0.048162505 0.550957702 0.036976685 0.009066367 0.000017835 0.000365676 0.000000325 0.031202399 0.000001444 0.113926000 0.100736000 0.093542900 0.079439400 0.084963300 0.096838200 0.070643400 0.087717100 0.077017200 0.078535100 0.052343000 0.032155100 0.016825900 0.004020850 0.001162120 0.002019230 0.005006890 0.001764390 0.001342050