Protein NDUFAB1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSP00000458770	pdb,2dnw,A,#1	69	156	1.9e-58	98.864
ENSOCUP00000007307	pdb,2dnw,A,#1	69	156	6.7e-57	96.591
ENSTSYP00000011714	pdb,2dnw,A,#1	69	156	7.39e-57	96.591
ENSCJAP00000038319	pdb,2dnw,A,#1	72	156	7.39e-57	98.824
ENSMOCP00000025048	pdb,2dnw,A,#1	69	156	1.09e-56	96.591
ENSCAFP00000026059	pdb,2dnw,A,#1	67	154	2.72e-56	95.455
ENSOARP00000000527	pdb,2dnw,A,#1	70	157	3.76e-56	96.591
ENSCATP00000035294	pdb,2dnw,A,#1	69	156	8.7e-56	95.455
ENSANAP00000002997	pdb,2dnw,A,#1	72	156	1.64e-55	96.471
ENSHGLP00100026851	pdb,2dnw,A,#1	72	156	6.21e-53	91.765
ENSPCOP00000015860	pdb,2dnw,A,#1	60	144	7.6e-53	94.118

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.07	0.166	0.765	0.103	0.311	0.586

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.312280701754386	0.203508771929825	0.00701754385964912	0	0.0105263157894737	0.0175438596491228	0.00350877192982456	0.445614035087719

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.556604923 0.000027546 2.911035821 0.000000016 0.185807497 4.051987633 0.000000016 0.034040604 0.986049764 3.585401173 0.000000017 0.290651266 0.405339370 0.132044472 1.406516072 0.000000016 0.073094207 0.219877061 1.793312988 3.190050763 3.159544020 0.700120652 0.010393654 0.060661734 0.384666292 0.760090873 4.206325063 1.846693861 0.000000016 0.074016862 0.044394214 0.036949093 0.360393515 1.624214274 1.074964034 5.094492068 0.000000016 0.000052816 0.047179476 0.000006249 0.000138200 0.841406757 0.127818549 4.060410987 6.434831086 0.000000016 0.001883117 0.224023852 0.000022533 0.000000008 0.685721451 0.000207448 0.104594870 0.389110606 7.544254249 0.000000016 0.000008912 0.008926826 0.022734692 0.069671372 0.336423357 0.000072940 0.141759341 0.378018375 0.114828756 5.904576044 0.000000016 0.092765541 0.081599676 0.000027038 0.000014074 0.012769846 0.000000001 0.000117212 0.396193423 1.271473376 0.793973424 3.773241057 0.000000016 0.516739164 0.046981154 0.000129720 0.000010751 0.000000006 0.000004638 0.000070653 0.000002902 0.000000003 1.992254697 3.019274568 8.703882198 0.000000016 0.002271225 0.018448101 0.008497148 0.000000001 0.000000001 0.000000001 0.000000002 0.585434041 0.000000003 0.000000004 0.000000004 1.427189701 9.208568560 0.000000016 0.124485729 0.000000002 0.126868500 0.000000016 0.591950019 0.000000001 0.000001242 0.000021717 0.000095441 1.362945041 0.000000004 0.434863436 0.000000009 0.000000018 0.000000016 0.000000001 0.000019294 0.323380859 0.000000378 0.000005541 0.324846575 0.005795076 1.246310475 4.939361101 2.216803807 2.113887504 0.000000017 0.000000009 0.000000018 0.000000009 0.000000016 0.000000001 0.047886999 0.000000790 0.000000001 0.000000001 0.000000001 0.000000002 0.120714206 0.000000003 0.242529929 1.029024961 0.195191151 0.761810781 0.000000018 0.000000009 4.067145302 0.000000016 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.822250687 1.202548415 1.212368534 0.000000004 0.000000004 0.460251369 2.245729074 0.000000018 0.000000009 0.000000022 2.298909207 0.000000016 0.000000001 0.179687868 0.005139905 0.114157164 0.015462550 0.335304937 0.596899530 1.024852604 0.000039983 0.003231210 0.337852843 0.370592923 0.000000009 0.000000018 0.000000009 0.000737721 2.192722969 0.000000017 0.006158210 0.115406000 0.135840000 0.147779000 0.123909000 0.091714500 0.109826000 0.045670500 0.048610600 0.036634900 0.026286900 0.026081000 0.020957200 0.010858300 0.005500850 0.010919900 0.004447370 0.014448200 0.006009040 0.012943100