Protein NDUFS2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSHGLP00000018982	pdb,4hea,4,#1	80	463	6.34e-128	46.615
ENSHGLP00000018982	pdb,4hea,E,#1	80	463	6.34e-128	46.615
MGP_PahariEiJ_P0076404	pdb,4hea,E,#1	80	463	2.78e-127	46.094
MGP_PahariEiJ_P0076404	pdb,4hea,4,#1	80	463	2.78e-127	46.094
ENSGACP00000026439	pdb,4hea,4,#1	83	466	5.36e-127	45.833
ENSGACP00000026439	pdb,4hea,E,#1	83	466	5.36e-127	45.833
ENSDARP00000098175	pdb,4hea,E,#1	81	464	2.98e-126	45.052
ENSDARP00000098175	pdb,4hea,4,#1	81	464	2.98e-126	45.052
ENSCINP00000012173	pdb,4hea,4,#1	88	471	3.31e-126	44.792
ENSCINP00000012173	pdb,4hea,E,#1	88	471	3.31e-126	44.792
ENSCSAVP00000014477	pdb,4hea,4,#1	86	469	3.81e-126	45.052

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.065	0.154	0.781	0.205	0.559	0.235

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.447902571041949	0.15020297699594	0.020297699594046	0.006765899864682	0.0040595399188092	0.006765899864682	0.0216508795669824	0.342354533152909

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.001655028 2.734381680 1.232248538 36.683845458 0.005256923 3.061256307 57.009750195 0.221459376 0.012203031 4.292420200 47.589916593 0.002717641 0.100496133 0.153379951 0.245513927 49.924988535 0.147897013 0.262833795 0.153593185 5.066616019 6.714493513 100.316369601 0.000017839 0.054793137 0.194143587 0.200197362 10.336795398 0.031258866 6.470108125 0.000000081 0.030017818 0.277332679 0.053799681 0.279902148 0.128726026 9.610764326 94.368569289 0.000000001 0.085206633 0.119269600 0.038327787 0.671626042 0.193197257 0.420065008 9.357627335 96.282592417 0.000000001 0.000115203 0.039572232 0.098748937 0.211267658 0.196492018 0.182480921 0.031529857 10.310338416 12.309368530 0.000000029 0.000062540 0.135609492 0.000005810 0.280851551 0.632469731 0.491689220 0.407827700 0.000533256 15.120060220 156.099766545 0.182819843 0.000213135 0.000075393 0.758129433 0.049865304 0.046481089 0.490571755 0.000041749 0.062097121 0.843813762 33.214156579 0.000025911 0.000000001 0.000000001 0.000000001 0.000000001 0.000000003 0.000000001 0.000000541 0.000007930 0.003409040 3.143856360 0.000050648 55.445945287 0.007365478 0.000000001 1.302403097 0.000000278 0.082266943 0.000000005 2.634394086 0.000000001 0.000000001 2.605727153 0.000000002 0.000000003 0.000000007 0.000000034 4646.331952293 0.001929967 0.229694256 3.421016013 96.816601567 1.754205432 12.029893925 3.344222216 1.345402925 5.166729215 3.294055633 0.016806699 4.777629938 0.000000034 4.588251009 0.000025911 0.213489822 0.000000001 0.000000001 0.000000001 0.000000001 0.824875174 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 0.000000007 13.261349586 0.000000116 0.000001294 0.000025911 0.662127480 0.412142204 1.480030634 1.830235266 0.000000001 0.000000014 0.000000001 0.000000001 0.000000002 0.000000002 0.000000003 0.000000007 0.000000034 0.000000116 0.005318015 0.000000055 0.001987376 0.005372444 0.000000108 3.826610138 0.110911088 0.000000001 0.000000001 0.000000001 0.000000001 0.000114134 7.820029293 0.000056846 0.000115898 0.000000034 0.000000116 0.068469323 0.000000055 0.000000308 1869.451548294 0.000262291 3.987804035 7.210385372 0.213109326 0.578268503 0.221566485 0.950163407 0.028294700 14.252860306 6.077196436 0.006157562 4.920431351 0.000025620 0.000563509 5.240950914 0.000000055 0.000000308 0.006094488 0.000003859 0.170662000 0.130207000 0.099890500 0.121097000 0.080366300 0.093330000 0.067653100 0.070621000 0.058088200 0.051411700 0.034570500 0.014354900 0.002984470 0.000860925 0.000077273 0.001804660 0.000324302 0.000295042 0.001396990