Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCCAP00000027125pdb,3iam,5,#11022071.11e-1941.379
ENSCCAP00000027125pdb,3ias,5,#11022071.11e-1941.379
ENSCCAP00000027125pdb,3i9v,E,#11022071.11e-1941.379
ENSCCAP00000027125pdb,3iam,E,#11022071.11e-1941.379
ENSCCAP00000027125pdb,3i9v,5,#11022071.11e-1941.379
ENSCCAP00000027125pdb,4hea,5,#11022071.11e-1941.379
ENSPCOP00000004562pdb,3iam,E,#11022041.39e-1944.737
ENSPCOP00000004562pdb,3i9v,5,#11022041.39e-1944.737
ENSPCOP00000004562pdb,4hea,5,#11022041.39e-1944.737
ENSPCOP00000004562pdb,3iam,5,#11022041.39e-1944.737
ENSPCOP00000004562pdb,3i9v,E,#11022041.39e-1944.737

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0320.0820.8860.1860.5010.313

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5451977401129940.1892655367231640.005649717514124290.01129943502824860.008474576271186440.01129943502824860.002824858757062150.225988700564972

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)