Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPEMP00000001887pdb,2lju,A,#1691651.52e-1536.735
ENSPMAP00000004645pdb,2lju,A,#1701653.49e-1539.394
ENSTRUP00000042611pdb,2lju,A,#1651611.24e-1436.364
ENSDORP00000002282pdb,2lju,A,#1691651.35e-1434.694
ENSTTRP00000003011pdb,2lju,A,#1361322.88e-1433.673
ZK973.10pdb,2lju,A,#1761663.07e-1435.87
ENSLACP00000012655pdb,2lju,A,#1631593.1e-1434.694
ENSSARP00000012464pdb,2lju,A,#1691653.48e-1434.694
ENSNGAP00000018400pdb,2lju,A,#1691643.78e-1434.021
ENSGMOP00000007911pdb,2lju,A,#1691655.67e-1432.653
MGP_PahariEiJ_P0027168pdb,2lju,A,#1691657.55e-1433.673

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0920.1610.7470.2480.4250.327

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3590604026845640.1812080536912750.02013422818791950.003355704697986580.0067114093959731500.003355704697986580.426174496644295

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)