Protein NDUFV2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSPMAP00000009749	pdb,3iam,B,#1	48	205	1.81e-35	37.736
ENSPMAP00000009749	pdb,3iam,2,#1	48	205	1.81e-35	37.736
ENSPMAP00000009749	pdb,2fug,K,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,3ias,B,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,4hea,C,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,2fug,2,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,3ias,2,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,3i9v,2,#1	56	205	2.07e-35	39.073
ENSPMAP00000009749	pdb,4hea,2,#1	56	205	2.07e-35	39.073
ENSCSAVP00000010153	pdb,3iam,B,#1	48	205	2.53e-35	38.365
ENSCSAVP00000010153	pdb,3iam,2,#1	48	205	2.53e-35	38.365

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.108	0.151	0.741	0.275	0.407	0.319

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.462209302325581	0.232558139534884	0.0174418604651163	0.00581395348837209	0.00290697674418605	0	0.00290697674418605	0.276162790697674

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.257531558 16.562874484 1.872992929 20.955692153 0.232300029 6.345822058 99.136724128 0.168078368 0.403900637 5.217513421 116.275038297 0.010257513 0.375432533 0.006439118 0.461133676 52.947974637 0.159662481 0.006941899 0.418914451 5.686284488 6.035634773 113.439723876 0.000003391 0.338257822 0.124134309 0.162096834 8.605385159 0.027548049 2.719559442 0.022844332 0.122860403 0.014016156 0.018057817 0.057212080 0.000002198 6.915058051 86.472629966 0.050247661 0.052003155 0.027004926 0.157131854 0.331872233 0.422309533 0.032826231 5.923592926 1.643035815 0.013693839 0.017686305 0.000671840 0.000000217 0.018859190 0.000001250 0.011638413 0.576357052 5.294588909 1.739113067 0.057506261 0.163810739 0.082419789 0.000449938 0.000235912 0.002484936 0.248884591 0.000106098 0.000001462 6.060354502 0.002090008 0.000000001 0.201549038 0.000016082 0.000000001 0.000000001 0.000000001 0.169150353 0.000000002 0.011185364 0.036613802 6.816642358 0.000038781 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 12.619699076 0.000038781 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000011 0.000002469 0.000000180 0.000000002 0.000001000 34.104829096 56200.577844137 0.920470281 182.416052314 33.838787617 139.291232583 59.095707064 9.729201392 130.621041109 11.795925156 37.120267316 2.320035653 7.751224380 0.009028727 0.000000004 0.000000021 76342.905896725 0.113959269 48.480867705 5.460664466 10.734211062 103.211189397 7.185109592 14.739232899 5.596820061 224.525890905 7.927286876 0.242860213 4.479646122 0.000000004 0.000000045 38607.816063896 0.000389180 0.000000437 0.000014093 7.016636534 0.000739000 0.000000001 2.440600515 0.000000001 0.000000001 0.000000004 3.850662036 3.718369540 0.000000002 0.000000004 0.000000021 0.004038707 0.000052212 0.000293223 0.000046728 25.540208831 0.005643495 0.000000692 0.000000318 0.000000041 0.000001057 0.000006110 0.000018140 0.000000185 0.000000016 0.000003822 0.000000004 0.000000021 0.055463998 0.003017923 0.000000174 4670.454325105 0.001354248 0.042579217 0.137732146 0.279370062 5.049896540 1.523103265 2.057820165 1.331765124 139.737852153 13.821127886 0.000336355 0.231130356 0.000000004 0.000001933 140.769706078 1640.255642857 0.000003651 0.000010894 0.000002579 0.108616000 0.072393300 0.090433500 0.086465600 0.076358000 0.088191000 0.087792900 0.079963800 0.084753700 0.086611600 0.065135000 0.040714600 0.025584500 0.004872790 0.000006554 0.000002960 0.001777710 0.000167301 0.000156451