Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSORLP00000001226pdb,1vqy,E,#11772771.25e-0733.654
ENSORLP00000001226pdb,1vqy,D,#11772771.25e-0733.654
ENSORLP00000001226pdb,1vqy,B,#11772771.37e-0733.654
ENSORLP00000001226pdb,1vqy,C,#11772771.51e-0733.654
ENSORLP00000001226pdb,1vqy,A,#11772771.51e-0733.654
ENSONIP00000013334pdb,1vqy,E,#12012671.67e-0738.806
ENSONIP00000013334pdb,1vqy,D,#12012671.67e-0738.806
ENSONIP00000013334pdb,1vqy,A,#12012671.69e-0738.806
ENSONIP00000013334pdb,1vqy,C,#12012671.69e-0738.806
ENSONIP00000013334pdb,1vqy,B,#12012671.8e-0738.806
ENSGACP00000018679pdb,1vqy,D,#11792792.11e-0733.654

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0250.0820.8930.070.6510.28

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4316702819956620.1279826464208240.02386117136659440.01084598698481560.008676789587852490.006507592190889370.004338394793926250.386117136659436

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)