Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSFALP00000010212pdb,2o36,A,#124674065.745
ENSPEMP00000025840pdb,2o3e,A,#141705094.436
ENSPVAP00000002419pdb,4fxy,Q,#122485064.44
ENSLAFP00000018028pdb,2o36,A,#11480090.021
ENSCAPP00000000439pdb,4fxy,Q,#138631077.56
ENSNGAP00000024692pdb,2o36,A,#124677088.226
ENSJJAP00000003932pdb,4fxy,P,#122679064.134
ENSFCAP00000014639pdb,2o36,A,#155708089.908
ENSPTRP00000057817pdb,4fxy,Q,#11493061.972
ENSMOCP00000002809pdb,1s4b,P,#136671060.856
ENSOCUP00000008123pdb,4fxy,Q,#138660091.974

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1210.6490.230.060.8350.105

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4353338968723580.1487743026204560.01775147928994080.00845308537616230.004226542688081150.002535925612848690.002535925612848690.380388841927303

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)