Protein NLRX1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSDARP00000123041	pdb,3tsr,E,#1	570	1000	5.38e-93	43.155
ENSDARP00000123041	pdb,3tsr,H,#1	570	1000	5.38e-93	43.155
ENSDARP00000123041	pdb,3tsr,F,#1	570	1000	5.38e-93	43.155
ENSDARP00000123041	pdb,3tsr,G,#1	570	1000	5.38e-93	43.155
ENSDARP00000123041	pdb,1dfj,I,#1	573	1000	3.6e-90	42.991
ENSDARP00000123041	pdb,2bnh,A,#1	573	1000	3.6e-90	42.991
ENSDARP00000123041	pdb,3tsr,E,#1	655	1056	1.31e-86	43.424
ENSDARP00000123041	pdb,3tsr,H,#1	655	1056	1.31e-86	43.424
ENSDARP00000123041	pdb,3tsr,F,#1	655	1056	1.31e-86	43.424
ENSDARP00000123041	pdb,3tsr,G,#1	655	1056	1.31e-86	43.424
ENSDARP00000123041	pdb,2bnh,A,#1	655	1056	2.97e-85	43.532

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.053	0.343	0.604	0.014	0.644	0.342

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0205461410132584	0.0446922469049082	0.0212485731846519	0.015014487663535	0.0151900957063834	0.0142242514707174	0.0117657388708403	0.857318465185706

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.766085775 1.108478159 3.364500137 2.590912342 0.062981386 6.592977385 3.814305354 0.091754881 0.339382104 4.481607780 4.607878196 0.025096381 0.106173365 0.079820502 0.337804504 9.223385065 0.047331717 0.109706545 1.749428323 3.789039409 5.514078750 14.682257770 0.007878591 0.028852608 0.048735493 0.121429397 4.511555490 0.791171566 1.320134138 0.006225321 0.028995040 0.022899837 0.090370983 1.661086986 0.146352113 4.294059642 2.773531679 0.003467841 0.012575167 0.005952941 0.011977937 0.162052110 0.130947738 0.120174754 4.384646067 3.070763900 0.002449542 0.003547436 0.005699817 0.029888399 0.307685311 0.028111623 0.033848751 0.281774162 4.347931589 3.878433897 0.011960968 0.027971982 0.007280062 0.009293657 0.216126182 0.108200927 0.107162257 0.068433160 0.172581007 5.055658913 6.302270325 0.005593058 0.004002213 0.005578146 0.062084828 0.058103019 0.037971644 0.089042870 0.081227610 0.326265166 1.253116431 11.887641737 6.375044699 0.025028264 0.032046245 0.010371416 0.121622733 0.009271220 0.019454175 0.022601005 0.037232452 0.055922039 0.361284421 0.161031899 22.443375832 103.444028576 0.308731781 0.076567590 0.172027761 0.036667267 0.289963427 0.073742235 0.080277868 0.189578212 0.020306096 0.407145492 0.389487447 1.047569482 53.590537266 568.972751329 0.247399088 3.125388952 0.741779779 3.563203065 1.079534662 0.844757457 3.057329528 0.727439867 0.681103153 1.584408880 2.191092791 1.317801819 19.262919375 226.407804358 610.802520641 0.089732087 0.566076892 0.309068733 0.581325529 0.550618766 0.534466802 0.461389544 0.317684109 2.535662428 0.533924699 3.378292703 5.990552041 2.525153005 41.426382639 512.906214678 8.615951876 0.099002673 0.021089716 0.005800252 0.193864807 0.056100595 0.317745640 0.165263779 0.001776880 0.002424343 0.215264715 0.319196380 2.394869090 1.403391319 6.847428648 59.540152937 203.661701420 21.745059241 0.134077121 0.237545079 0.250411622 1.312161940 0.272154127 0.188183350 0.114582071 1.508158400 0.417810262 0.472233357 0.664683030 1.710146429 40.345365938 3.993945405 49.310423448 40.599984995 381.668700005 565.999952321 0.036677702 0.118123788 0.400187323 1.122959417 1.201856061 3.054821353 3.759811253 0.913545078 30.231739999 11.772256998 1.388640139 7.461814893 4.061925723 5.490474005 21.086861258 58.850009523 36.559530749 25.197336546 0.000125841 0.120823000 0.076809000 0.067476900 0.089998800 0.084652400 0.090006900 0.088329700 0.107803000 0.102615000 0.087560100 0.050630900 0.021232100 0.007378840 0.001351040 0.000618423 0.000519813 0.000665572 0.000394225 0.001008390