Protein NMNAT3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSACAP00000003394	pdb,1jbh,A,#1	113	245	1.06e-68	72.593
ENSACAP00000003394	pdb,1kgl,A,#1	113	245	1.06e-68	72.593
ENSACAP00000003394	pdb,1crb,A,#1	135	245	1.57e-68	84.685
ENSACAP00000003394	pdb,1mx7,A,#1	135	245	1.57e-68	84.685
ENSACAP00000003394	pdb,1mx8,A,#1	135	245	1.57e-68	84.685
ENSLOCP00000005171	pdb,1jbh,A,#1	175	285	1.55e-61	76.577
ENSLOCP00000005171	pdb,1kgl,A,#1	175	285	1.55e-61	76.577
ENSLOCP00000005171	pdb,1mx7,A,#1	175	285	1.73e-61	76.577
ENSLOCP00000005171	pdb,1mx8,A,#1	175	285	1.73e-61	76.577
ENSLOCP00000005171	pdb,1crb,A,#1	175	285	1.73e-61	76.577
ENSAPLP00000009335	pdb,1lpj,A,#1	143	252	2.92e-60	73.636

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.03	0.058	0.912	0.029	0.405	0.566

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.23109243697479	0.123249299719888	0.0280112044817927	0.0140056022408964	0.00560224089635854	0.0126050420168067	0.0210084033613445	0.564425770308123

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.534608666 1.277140874 1.950810010 0.000033701 0.000000120 4.983353728 0.000000240 0.005757283 0.004953135 5.445099674 0.000000323 0.016157927 0.061177419 0.150336700 0.002876178 0.000000438 0.084950827 0.039566134 0.152994388 5.731811379 7.101693729 0.000000382 0.015823398 0.056176068 0.025982128 0.013435030 6.999204827 0.119597249 0.000000083 0.000001189 0.009135284 0.020336136 0.039583585 0.513777827 0.079542507 7.030374061 0.000038475 0.000000001 0.038842833 0.074734305 0.031132276 0.257629009 0.370791538 0.079617161 6.336203962 0.000099733 0.002560473 0.001777546 0.000009219 0.026555386 0.292866740 0.027522825 0.035450542 0.058219566 5.054761154 0.595624814 0.000000039 0.030323216 0.002548531 0.009827448 0.154971435 0.132647304 0.115830806 0.010590319 0.016781888 8.246042869 0.000032789 0.016782106 0.022358859 0.101900447 0.057033634 0.011798501 0.132087795 0.023887275 0.005552578 0.048571781 0.009879557 9.993675866 0.000000076 0.000000002 0.000000111 0.000986370 0.000285654 0.092515855 0.091428026 0.104522733 0.048804089 0.119409976 0.038452426 0.005274628 17.416957898 0.000000365 0.001477182 0.000000018 0.000009365 0.187674272 0.057479269 0.002350326 0.000209379 0.002008998 0.222076495 0.000096835 0.010340324 1.216609920 28.520201164 0.000000076 0.000000155 0.000003606 0.000000827 0.002530785 0.000032134 0.110294477 0.000020362 0.000001235 0.327004148 0.000164391 0.000858114 3.022393544 5.999193145 32.628279641 0.000000099 0.219545485 0.124612209 0.000116873 0.019198152 0.000002022 0.921876297 0.000041221 0.000000051 0.000110899 0.000146348 0.617681422 0.784916980 1.039123279 0.014009050 77.030396197 0.000000076 0.000259606 0.000000018 0.000000007 0.121306220 0.000000001 0.001229258 0.000000001 0.000000001 0.000000001 0.114296579 0.049175612 0.478021929 0.419309956 7.111897579 0.001167892 79.542718212 0.000000076 0.000000001 0.000000138 0.005222305 1.604235041 0.643503395 0.394978414 0.012084526 1.703672012 0.001364292 1.054401996 1.818175777 0.038350407 17.438144968 0.019092494 0.000643285 0.000196866 20.512422788 0.000548441 0.118550234 0.274103342 0.190120405 0.005398430 0.016976990 0.317513792 0.356046044 0.000883093 0.304674925 0.305687347 1.655675535 1.811765235 3.534215678 1.370299642 0.009099999 1.302098669 20.375303331 53.333906909 0.001311030 0.118764000 0.069625200 0.067389400 0.076174000 0.087150900 0.084359800 0.084641300 0.108687000 0.093935200 0.081125700 0.046646700 0.033335500 0.021813100 0.008671680 0.002322330 0.003430270 0.002901120 0.002092140 0.005623390