Protein NNT

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMFAP00000039416	pdb,1pt9,B,#1	902	1083	6.25e-125	100
ENSMFAP00000039416	pdb,1pt9,A,#1	902	1083	6.25e-125	100
ENSMFAP00000039416	pdb,1u31,B,#1	902	1083	6.25e-125	100
ENSMFAP00000039416	pdb,1djl,A,#1	902	1083	6.25e-125	100
ENSMAUP00000013722	pdb,1pt9,B,#1	847	1028	1.27e-124	98.901
ENSMAUP00000013722	pdb,1u31,B,#1	847	1028	1.27e-124	98.901
ENSMAUP00000013722	pdb,1pt9,A,#1	847	1028	1.27e-124	98.901
ENSMAUP00000013722	pdb,1djl,A,#1	847	1028	1.27e-124	98.901
ENSDNOP00000002808	pdb,1u31,B,#1	904	1085	4.83e-124	98.901
ENSDNOP00000002808	pdb,1djl,A,#1	904	1085	4.83e-124	98.901
ENSDNOP00000002808	pdb,1pt9,B,#1	904	1085	4.83e-124	98.901

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.066	0.165	0.769	0.111	0.55	0.339

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.72055030094583	0.205503009458297	0.00687876182287188	0	0	0	0.000859845227858985	0.0662080825451419

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.238299083 0.000357764 1.859634210 0.008788817 0.000009286 4.347227071 0.046975134 0.319047493 0.033337171 6.865489483 0.000491421 0.000127179 0.083798397 0.224276725 0.449054508 0.523124234 0.355184688 0.315874808 0.287286734 7.564964726 9.188604342 0.000000010 0.000000348 0.000992914 0.251014570 0.099741826 12.952136844 0.065467384 0.026303987 0.000250945 0.050905073 0.001805556 0.205439454 1.119081263 0.147013352 10.678897870 0.000000010 0.000000029 0.043577885 0.000192005 0.174236690 0.165243054 0.156204949 0.204521811 11.722236637 0.000000010 0.000000000 0.000032183 0.000000017 0.130670992 0.474782102 0.293674998 0.223576670 0.824263502 10.762387791 0.000000010 0.011200972 0.068409177 0.000045428 0.161047978 0.122605179 0.138617134 0.000004506 0.067846094 0.409809164 12.775014556 0.000000010 0.008241045 0.000000001 0.000473588 0.181349529 0.011804856 0.197784621 0.268907855 0.346601267 0.551487086 0.620754555 17.466233010 0.000000010 0.007201539 0.000000001 0.000000001 0.223620797 0.000415364 0.409616379 0.000745878 0.019524004 0.022688975 0.553775258 0.001233927 10.156428998 0.000000010 0.000000000 0.043302040 0.000266756 0.062005690 0.000000002 0.301851244 0.000000002 0.000000002 0.078223031 0.182078976 0.856356432 0.726586191 28.620516565 0.000000010 0.000000000 0.000000001 0.027231996 0.309462509 0.317879536 0.050844344 0.000243105 0.223193020 0.000306170 0.000000002 0.000000012 0.700862112 0.007518131 7.151467986 0.000000010 0.000000000 0.000000003 0.016014375 0.637353146 0.143669150 0.205182887 0.000000110 0.083160519 0.022270551 0.531172002 0.478467241 0.000009847 0.504919230 1.512436861 7.047868069 0.000000010 0.000000000 0.000000001 0.000000001 0.099248376 0.000000002 0.428086567 0.000399568 0.176032560 0.000272009 0.123767270 0.123297874 0.000000004 1.079074260 0.000001189 3.073585716 0.000000024 0.000000010 0.000000000 0.140440133 0.000000001 0.000000001 0.000000002 0.203046550 0.000000002 0.000000002 0.000000002 0.000000002 1.891533753 0.000000004 1.518542180 0.314279837 8.586892778 0.000000024 0.000000016 0.000000010 0.041941674 0.000000001 0.017706051 0.000366702 0.236150671 0.281509430 0.000001515 0.014036582 0.226320093 0.411724085 0.626760783 0.053708787 0.421136412 2.610328196 0.768668173 1.798698470 0.000000016 10.543905636 0.010194500 0.225867000 0.134641000 0.087179800 0.084284200 0.063125800 0.080464800 0.057481400 0.060122400 0.054418500 0.044312200 0.035204500 0.022259300 0.013148400 0.004034780 0.005354300 0.004132060 0.006363080 0.001037680 0.006374090