Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSONIP00000004560pdb,4g63,A,#1204728.08e-6632.135
ENSONIP00000004560pdb,4ohf,D,#1194728.23e-6632.068
ENSONIP00000004560pdb,4ohf,B,#1194721.2e-6532.068
ENSONIP00000011535pdb,4ohf,B,#1104643.18e-6532.211
ENSONIP00000011535pdb,4ohf,D,#1104643.29e-6532.211
ENSGACP00000003375pdb,4ohf,D,#1324873.43e-6532.636
ENSGACP00000003375pdb,4ohf,B,#1324904.09e-6532.432
ENSCINP00000015119pdb,4ohf,B,#1354931.29e-6431.59
ENSCINP00000015119pdb,4ohf,D,#1354901.52e-6432
FBpp0309367pdb,4ohf,D,#11556091.88e-6433.263
FBpp0309367pdb,4ohf,B,#11546122.13e-6432.985

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0290.0470.9240.0120.4390.549

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1447721179624670.1441018766756030.04557640750670240.03887399463806970.01943699731903490.01675603217158180.01273458445040210.577747989276139

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)