Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPVAP00000010086pdb,2byl,A,#136436089.851
ENSGMOP00000017378pdb,2byj,A,#139439079.302
ENSODEP00000023802pdb,2oat,A,#136420079.208
ENSTGUP00000011788pdb,2oat,B,#137439086.849
ENSNLEP00000024504pdb,1oat,B,#133399086.544
ENSMLUP00000022437pdb,2byl,A,#123412074.755
ENSCGRP00001012266pdb,1oat,A,#136439091.584
ENSMODP00000020699pdb,1gbn,A,#138439088.806
ENSSARP00000010119pdb,1gbn,C,#11372081.989
ENSCGRP00001012266pdb,2oat,B,#136439091.584
ENSMLUP00000018315pdb,2byl,B,#126413076.167

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2290.4930.2780.3870.440.173

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6677796327212020.061769616026711200.003338898163606010.003338898163606010.001669449081803010.001669449081803010.260434056761269

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)