Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSBTAP00000016671pdb,3zet,B,#1393921.99e-6035.775
ENSXMAP00000005904pdb,3zet,B,#1343872.1e-6036.517
ENSODEP00000016861pdb,3zet,B,#1393902.13e-6034.561
ENSAPLP00000011323pdb,3zet,B,#1373902.88e-6034.648
ENSMUSP00000110128pdb,3zet,B,#1393923.84e-6035.775
ENSBTAP00000016671pdb,4ydu,A,#1393924.63e-6036.056
ENSFALP00000004598pdb,3zet,B,#1373904.81e-6034.93
ENSBTAP00000016671pdb,4wq5,A,#1393925.07e-6036.056
ENSBTAP00000016671pdb,4ydu,B,#1393925.27e-6036.056
ENSBTAP00000016671pdb,4wq5,B,#1393925.66e-6036.056
ENSXMAP00000005904pdb,4ydu,A,#1343871.02e-5936.798

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0580.0660.8760.0750.5150.411

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5716878402903810.1778584392014520.0018148820326678800.007259528130671510.02177858439201450.01088929219600730.208711433756806

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)