Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSFALP00000001642pdb,1fvo,B,#134354080.374
ENSNGAP00000004467pdb,1ep9,A,#135354094.688
ENSVPAP00000000665pdb,1oth,A,#18328086.604
ENSGACP00000004330pdb,1ep9,A,#19328073.75
ENSRBIP00000027456pdb,1oth,A,#131324082.166
ENSOANP00000011324pdb,1fb5,A,#135354087.812
ENSFALP00000001642pdb,1fb5,A,#135354079.062
ENSBTAP00000001947pdb,1fvo,B,#134354095.95
ENSMOCP00000024171pdb,1c9y,A,#134354094.081
ENSTSYP00000000450pdb,1fvo,A,#130285093.75
ENSGACP00000004330pdb,1c9y,A,#19328073.75

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1070.4770.4170.2640.5960.141

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7916666666666670.07352941176470590.004901960784313730.002450980392156860000.127450980392157

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)