Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOPRP00000011902pdb,2iwz,A,#140430086.701
ENSECAP00000000457pdb,2iwz,A,#140461094.787
ENSPCAP00000012813pdb,3hhd,C,#12852085.094
ENSMODP00000018711pdb,2iwz,B,#144394084.9
ENSEEUP00000011829pdb,2iwy,B,#138460088.416
ENSHGLP00000006451pdb,3hhd,D,#117867084.724
ENSGALP00000048384pdb,2jfd,C,#1421821069.077
ENSCPOP00000002086pdb,3hhd,A,#12840083.784
ENSDARP00000137981pdb,2iwz,A,#135454070.476
ENSSTOP00000009235pdb,2jfd,C,#1422822083.292
ENSCLAP00000007971pdb,3hhd,B,#12852085.546

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1740.2830.5430.1320.1590.709

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.03842578246048960.1467823571945050.06073752711496750.01621733292015290.004544985022208450.001342836483834310.001239541369693210.730709637434149

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)