Protein PAM16

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMUSP00000004646	pdb,2b4e,A,#1	8	391	0	73.247
ENSGMOP00000018433	pdb,2b4e,A,#1	9	443	0	58.166
ENSGMOP00000004049	pdb,2b4e,A,#1	11	393	0	69.271
ENSTRUP00000018363	pdb,2b4e,A,#1	9	392	0	74.352
ENSGALP00000057864	pdb,2b4e,A,#1	10	343	0	71.182
ENSLOCP00000007954	pdb,2b4e,A,#1	9	432	0	65.728
ENSGACP00000027132	pdb,2b4e,A,#1	9	392	0	66.321
ENSRNOP00000026496	pdb,2b4e,A,#1	9	394	0	99.223
ENSSHAP00000000088	pdb,2b4e,A,#1	30	355	0	72.171
ENSTNIP00000005018	pdb,2b4e,A,#1	9	391	0	73.575
ENSGMOP00000016085	pdb,2b4e,A,#1	9	391	0	67.532

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.059	0.094	0.847	0.036	0.116	0.847

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0644504748982361	0.112618724559023	0.0352781546811398	0.0569877883310719	0.0457937584803256	0.0247625508819539	0.0067842605156038	0.653324287652646

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.709481079 0.204697247 2.049113932 0.004128618 0.000466385 5.717426438 0.367788339 0.072904789 0.074162557 5.091302664 0.000000020 0.000183921 0.072660309 0.027723336 0.141236282 0.152798079 0.123860799 0.136579773 0.437167167 5.281255001 6.572312299 0.000000020 0.001477078 0.037670076 0.115667432 0.108653813 7.655395615 0.365078455 0.001683427 0.012519783 0.023996923 0.058460187 0.072413287 0.671601204 0.071947950 7.907640217 0.000000020 0.004113607 0.003885429 0.012444685 0.054430734 0.125466983 0.316342284 0.128765506 7.679636768 0.000000020 0.002545084 0.031142653 0.006307341 0.059567492 0.182299360 0.052352375 0.042281275 0.192662361 6.702347138 0.000000020 0.000168581 0.000395455 0.014694722 0.021410266 0.140305850 0.032356750 0.177395210 0.149777666 0.142430823 7.249103838 0.000000020 0.006070113 0.000009843 0.001196556 0.013483445 0.125039221 0.066424044 0.018331923 0.077610113 0.186510485 0.261248997 10.069448414 0.000000020 0.000000008 0.047509916 0.082856311 0.072601695 0.054332204 0.143705158 0.195227346 0.063496526 0.461365784 0.390220943 0.028842815 13.468031492 0.000000020 0.000000003 0.069542840 0.404030756 0.010644356 0.210919441 0.070890514 0.000007090 0.428819817 0.078023261 0.440503541 0.010206696 0.659799832 25.309375587 0.000000020 0.000007721 0.130815665 0.045347385 0.173004341 0.003292672 0.079495149 0.113261697 0.133431244 0.589603494 0.020053750 0.319389207 0.557005168 5.488151136 69.221598199 0.791394612 0.043730512 0.075259994 0.000002336 0.247231108 0.361777138 0.131063950 0.000000826 0.280771005 0.247147939 0.530824469 0.010820429 0.000014250 0.000000033 6.597654264 36.303053246 0.714880847 0.000000001 0.023738680 0.005359519 0.107712785 0.001306471 0.583382590 0.227962922 0.015905576 1.070955474 0.354841226 0.047866977 0.862869264 2.505040116 6.216895834 0.001305732 3.969624329 0.000000020 0.000000001 0.000000001 0.000000002 0.000192097 0.358754602 0.754859909 0.011420523 0.000048664 0.007312406 0.000001946 1.752608807 0.923995957 0.000397421 5.813684669 5.670199910 12.537346840 17.729104993 0.000000020 0.000000001 0.013775620 0.000053423 0.108446159 0.000057805 0.204398126 0.013941619 0.198714581 0.395803391 0.219504806 0.860675244 0.579527626 7.536642127 3.854184318 6.603500240 0.125443505 3.661210327 15.003348775 0.005081700 0.122959000 0.077097800 0.075901400 0.098721800 0.085094100 0.102862000 0.076552800 0.081094200 0.079249700 0.076911300 0.061225300 0.035120500 0.009255740 0.003304720 0.002747240 0.001384990 0.001550490 0.001075020 0.002810200