Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCAPP00000012447pdb,4gmz,A,#12622088.889
ENSDORP00000010273pdb,4gnp,A,#110622089.56
ENSGMOP00000020069pdb,4gmu,A,#12614074.225
ENSMEUP00000000999pdb,4gnq,A,#13320087.736
ENSCINP00000012511pdb,4gmm,A,#126641065.049
ENSDORP00000001318pdb,2rk8,A,#135643071.593
ENSGACP00000002900pdb,4gnp,A,#126635067.267
ENSCLAP00000011778pdb,4gnl,A,#110622089.723
ENSXETP00000035200pdb,2fah,B,#119626062.951
ENSMODP00000004399pdb,2fah,C,#133490071.242
ENSORLP00000007893pdb,4gmw,A,#137646066.939

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0790.4090.5120.1990.2510.549

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6535087719298250.02741228070175440.002192982456140350.001096491228070180.006578947368421050.007675438596491230.005482456140350880.296052631578947

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)