Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCATP00000032736pdb,3g5p,A,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5k,C,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5k,D,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5k,B,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5p,B,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5k,A,#1642432.43e-12697.778
ENSCATP00000032736pdb,3g5p,D,#1642432.43e-12697.778
ENSRROP00000043319pdb,3g5k,D,#1642431.83e-12596.667
ENSRROP00000043319pdb,3g5k,C,#1642431.83e-12596.667
ENSRROP00000043319pdb,3g5k,A,#1642431.83e-12596.667
ENSRROP00000043319pdb,3g5p,D,#1642431.83e-12596.667

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.170.3490.4810.2520.4590.289

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5985130111524160.1933085501858740.026022304832713800.003717472118959110.007434944237918220.007434944237918220.163568773234201

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)