Protein PDHA1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOPRP00000014702	pdb,3exf,C,#1	98	390	0	86.348
ENSPEMP00000022697	pdb,2ozl,A,#1	29	364	0	81.768
ENSPSIP00000007196	pdb,3exe,E,#1	32	391	0	88.333
ENSACAP00000012035	pdb,3exf,E,#1	36	395	0	86.944
ENSECAP00000000781	pdb,3exf,C,#1	28	388	0	85.042
ENSONIP00000011008	pdb,3exf,E,#1	1	320	0	82.812
ENSOANP00000006386	pdb,3exe,E,#1	31	391	0	93.352
ENSOARP00000017879	pdb,3exf,C,#1	31	358	0	80.055
ENSGACP00000027344	pdb,3exe,G,#1	30	390	0	81.163
ENSGACP00000016919	pdb,3exe,A,#1	33	365	0	66.759
ENSOARP00000015940	pdb,3exe,E,#1	30	390	0	93.906

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.112	0.273	0.615	0.128	0.56	0.311

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.250196695515342	0.0857592446892211	0.038552321007081	0.012588512981904	0.011014948859166	0.00786782061369001	0.003933910306845	0.590086546026751

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.273047549 0.036731711 1.531635945 0.066954114 0.154366935 5.130875123 0.150583559 0.270666475 0.760352816 4.537850680 0.042782073 0.079303571 0.278570981 0.544714138 0.882387838 0.266649933 0.307444700 0.205764047 1.005983196 4.470294629 5.827025637 0.030598174 0.075872696 0.014243679 0.575037931 0.499509426 7.652222524 0.855089559 0.000000004 0.008056797 0.000300011 0.095566370 0.591898881 1.574400961 0.489511875 8.380188592 0.000000065 0.008293088 0.030076505 0.123159118 0.026517403 0.870150056 0.433150060 1.123461126 6.666870145 0.009259508 0.046316705 0.068191167 0.000947647 0.029820503 1.119550584 0.176961928 0.119030894 2.199803096 9.674008874 0.000118166 0.041985829 0.058056561 0.013359181 0.059122577 0.170323686 0.204762970 0.217539135 0.454435747 0.584790061 7.618018979 0.000000004 0.012510714 0.033974345 0.036562254 0.038352110 0.468524115 0.239271596 0.082195327 0.202633008 1.175671108 0.327984943 8.046743884 0.000000003 0.058166475 0.075846295 0.000002216 0.280397973 0.004475079 0.000727998 0.054090302 0.118300988 0.399279669 1.242533416 0.021204522 7.896099473 0.000000003 0.000006928 0.000002703 0.193974965 0.018046833 0.029029173 0.003447410 0.552230239 0.447458009 0.000305857 0.543129616 1.247332986 0.062994342 9.536567296 0.000000070 0.000000059 0.083591922 0.000018895 0.241166348 0.744633643 0.567827041 0.053695167 0.003942531 0.421224027 0.015358358 1.671386944 0.000047187 1.262896454 1.356256717 0.000000026 0.002429257 0.236581331 0.000189765 0.349673426 0.000012417 0.002118882 0.000001651 0.000006250 0.074941835 0.002683481 1.250614155 4.713820042 0.000018120 2.768332136 0.000147190 0.000000003 0.040499309 0.000000001 0.000000002 0.033476512 0.000019088 0.451234430 0.000098278 0.338193332 1.432052247 0.612952973 1.081698424 0.190417228 0.974118892 0.000000014 0.000000346 0.000000251 0.000000003 0.000000237 0.000000463 0.000002436 0.000145609 0.251843195 0.364788117 0.288952956 0.867457414 0.001954570 0.000426168 0.040060905 1.510255216 4.377780914 6.599528498 0.000153036 0.000036764 14.442035455 0.000000156 0.000000089 0.000001621 0.014780528 0.649140070 0.853036939 0.011267142 0.332004833 1.029311821 4.037093137 1.228721646 2.456838890 1.207578643 0.000169341 0.000028778 11.336548272 0.000562107 0.000026013 12.488931044 0.033664100 0.173600000 0.098895800 0.085088300 0.105183000 0.069227600 0.093849000 0.061497900 0.063888900 0.055918700 0.053237200 0.041113400 0.028775600 0.014172500 0.007406120 0.003008870 0.002276810 0.004704600 0.002540890 0.001951130