Protein PDHA2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOGAP00000019702	pdb,3exf,C,#1	31	380	0	81.994
ENSPFOP00000019414	pdb,3exf,C,#1	30	390	0	81.44
ENSOANP00000006386	pdb,3exh,C,#1	31	391	0	92.521
ENSPEMP00000022697	pdb,3exe,C,#1	30	364	0	82.271
ENSTGUP00000007894	pdb,3exf,A,#1	36	396	0	86.15
ENSGGOP00000013411	pdb,3exf,E,#1	29	388	0	86.667
ENSDARP00000012693	pdb,2ozl,A,#1	33	393	0	82.271
ENSAMXP00000014296	pdb,3exe,E,#1	40	400	0	83.102
ENSAMXP00000014296	pdb,3exh,C,#1	40	400	0	82.271
ENSOPRP00000012669	pdb,2ozl,A,#1	27	388	0	86.188
ENSTRUP00000043330	pdb,3exe,E,#1	38	398	0	80.332

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.084	0.329	0.588	0.045	0.275	0.68

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.404733727810651	0.0745562130177515	0.0153846153846154	0.00946745562130178	0.0165680473372781	0.0142011834319527	0.00710059171597633	0.457988165680473

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.373923148 0.030274559 1.594170348 0.055312384 0.148553193 4.795010068 0.549756527 0.350510968 0.520421394 4.097858817 0.042489475 0.024746700 0.288159717 0.679828456 0.607005108 0.091501187 0.322712186 0.179593340 0.887648526 4.494130502 5.350930183 0.001715414 0.013860835 0.103362310 0.590500099 0.248798551 7.298567305 0.606473235 0.000000004 0.020553705 0.007445312 0.170600292 0.371767573 0.737304875 0.678243472 7.825627489 0.000003772 0.032066644 0.035577820 0.213242576 0.276252113 1.147121245 0.449689744 0.463465550 6.081648693 0.019644367 0.016797497 0.000758324 0.004079265 0.062061655 1.196922111 0.176130074 0.218984945 1.525103326 10.067908956 0.073510058 0.037703576 0.111351112 0.019181517 0.056785271 0.310431145 0.093909533 0.339105580 0.291718464 0.201551755 7.936178951 0.000000004 0.030048726 0.000433546 0.002371804 0.371883376 0.256026141 0.212153310 0.388224985 0.371708127 0.465706589 0.297702260 9.258234216 0.000000004 0.066530034 0.109015274 0.000792804 0.032018416 0.514649043 0.036874689 0.086125657 0.445219168 0.422434939 0.502568890 0.412919310 8.306961297 0.000000004 0.046191760 0.146503610 0.000275939 0.150666330 0.308478563 0.062543390 0.000935365 0.244891032 0.000000102 0.429970641 1.129553455 0.000001162 7.824451810 0.000000004 0.000000001 0.000001762 0.062999214 0.037586642 0.293488720 0.651592919 0.000070249 0.652961711 0.960304621 0.043313089 0.759116716 0.000000004 0.000000007 0.000000013 0.000000004 0.000000001 0.000002918 0.001336988 0.000001052 0.000006030 0.647503224 0.000000002 0.000000002 0.013943524 1.618634818 0.053572899 3.802946049 0.000000007 2.966228252 0.000000032 0.000000004 0.019430324 0.000000001 0.000000001 0.021379916 0.003356891 0.546078382 0.000000002 0.038613327 1.155116146 0.849410924 0.950241707 0.789239749 1.146042269 0.000000013 1.412910505 0.000000060 0.000000004 0.000000001 0.000000001 0.007808286 0.000003446 0.246469047 0.339353286 0.072961081 0.497066500 1.114040574 0.010037231 0.575453752 3.078575373 1.484120913 4.386909896 0.000000032 0.000000060 14.364875483 0.000000004 0.097747748 0.000000001 0.000000055 0.001047414 0.928395969 0.000008905 0.277346163 1.621842302 2.637827053 1.557654571 1.105162135 2.579142954 0.301947702 0.000000050 6.377636074 0.000000060 0.000000065 9.326575073 0.023965700 0.160284000 0.101805000 0.089866200 0.107079000 0.074824000 0.098467000 0.065387600 0.065399700 0.057238400 0.052590800 0.040793200 0.026075600 0.014119200 0.007988630 0.003155260 0.001657400 0.004250820 0.002276720 0.002775950